Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1190 178 3e-42 seq9 129 1e-27 seq20 109 1e-21 seq1191 107 4e-21 seq5 107 4e-21 seq18 77.0 6e-12 >seq1190 Length=152218 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 105767 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 105826 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 105827 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 105885 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 105886 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 105945 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 105946 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 105995 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 129627 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 129568 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 129567 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 129509 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 129508 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 129449 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 129448 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 129399 >seq9 Length=50189283 Score = 129 bits (142), Expect = 1e-27 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||| ||| |||| | ||||| ||||||| ||||||| || ||||||||||| Sbjct 33308241 GGGATAGTCTCAGGTAGATAGTTTCTATGGGGCGTAAGCCTCCCTAAAGGTAACGGAGGC 33308300 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||||| || ||| || | | |||||||||||| ||||| Sbjct 33308301 GTGCAAAGGTTTCCTCAGGCCAGACGGAGTTTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 33308359 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||| ||| | |||| | ||| | | |||| |||||||| |||||||||| | || Sbjct 33308360 GCTTGATTGCAAGACCCACCCGTCGATTATGGACAAAAGTCGGTCTTAATGATCTGACGA 33308419 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| |||| |||||| | ||||||||| ||| || |||||| Sbjct 33308420 TGCCGAGTGGAAGGGCCATCGCTCAATGGATAAAAGTTACTCTAGGGATA 33308469 >seq20 Length=47900577 Score = 109 bits (120), Expect = 1e-21 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||| | | |||| | ||| |||||||||||||||| Sbjct 44501923 AGTGCAAAGGCAGAAGGGAGCTTGACTACAAGACCCACCCGTCAAGCAGGGACGAAAGTC 44501982 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | |||| ||||| | | |||| | ||||| || ||||| || || |||||||| ||| Sbjct 44501983 GACCTTAGTGATCTGACAGTGCCAAGTGGAAGGGTCGTCGTTCAACTGATAAAAGTTACT 44502042 Query 331 CTGGGGAT 338 || ||||| Sbjct 44502043 CTAGGGAT 44502050 >seq1191 Length=402558 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 187207 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 187148 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 187147 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 187093 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 187092 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 187033 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 187032 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 186982 >seq5 Length=42234498 Score = 107 bits (118), Expect = 4e-21 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||| ||||| |||||||| ||| ||||| | |||| | || || | | | Sbjct 14952640 GCCTTCCAAAAGGTAACGGACGCGTGCAAAGGTTTCCTCGGGCCAGACAGAGATTGTCCC 14952581 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 |||||||||||| ||||| | |||||||| | |||| | ||| |||||||| |||| Sbjct 14952580 TTGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGAGGAAA 14952521 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 ||||| |||| ||||||| | ||| || ||||| | | | ||||| || |||||||| | Sbjct 14952520 GTCGGCCTTAGTGATCCGACAATGCCGAGTGGAAGGACTGCCGCTCAACAGATAAAAGTT 14952461 Query 328 AC 329 || Sbjct 14952460 AC 14952459 >seq18 Length=58018742 Score = 77.0 bits (84), Expect = 6e-12 Identities = 112/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||| | |||||||||| ||||||||||| Sbjct 5017460 GGGACAATCTCAGGTAGACAGTTTCTATGGGGTGTAGGCCTCCCAAAAGGTAACGGAGGC 5017519 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || | | | || | | |||||||||||| ||||| Sbjct 5017520 GTGCAAAGGTTTCCTCGGGCCAGACGAAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 5017578 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265 | |||||||| | |||| | ||| ||||||||||| Sbjct 5017579 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGA 5017614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982388299616