Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1190 221 3e-55 seq1191 206 6e-51 seq13 174 3e-41 seq5 141 2e-31 seq4 118 2e-24 seq7 91.5 3e-16 seq1 73.4 8e-11 >seq1190 Length=152218 Score = 221 bits (244), Expect = 3e-55 Identities = 239/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 99978 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 99920 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 99919 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 99860 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 99859 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 99800 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 99799 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 99754 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| || || ||| || || |||||||||| Sbjct 99753 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGTAGGTTCTTACGCGTTACTCACCC 99696 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 99695 GTCCGCCACT 99686 Score = 221 bits (244), Expect = 3e-55 Identities = 239/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 135416 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 135474 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 135475 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 135534 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 135535 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 135594 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 135595 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 135640 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| || || ||| || || |||||||||| Sbjct 135641 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGTAGGTTCTTACGCGTTACTCACCC 135698 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 135699 GTCCGCCACT 135708 >seq1191 Length=402558 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 296923 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 296980 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 296981 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 297040 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 297041 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 297100 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 297101 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 297140 >seq13 Length=45874162 Score = 174 bits (192), Expect = 3e-41 Identities = 142/170 (84%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || | |||||||||||||||| | || |||||||| || ||||| Sbjct 44926576 CACGCGGCATTG-CTCG-TCAGGCTTTCGCCCATAGCGGAAAATTCCCCAGAGCGGCCTC 44926633 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||| |||||||| |||||||||||| |||||||| ||||||||||| |||||| | Sbjct 44926634 CCGTAAGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGTAGATCATCCTCTTGGACCAGCT 44926693 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || ||| | |||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 44926694 ACTAATCATTGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 44926743 >seq5 Length=42234498 Score = 141 bits (156), Expect = 2e-31 Identities = 148/192 (77%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 10 CCGAAGACCTTCT---TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTC 66 ||| || |||||| |||||||| ||||| | |||||||||||||||||||| Sbjct 14964586 CCGTAGGCCTTCTACCTTCACACAA----CATTGT-TCCATCAGGCTTTCGCCCATTGTG 14964640 Query 67 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGAC 126 || |||||||| | |||||| | ||||||||||| | |||||||| | |||||| Sbjct 14964641 AAAAATTCCCCATTACTGCCTTCTTTAGGAGTCTGGGTCAGGTCTCAGTCCTAGTGTGGT 14964700 Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 | ||||||||||||||||| || || | ||||| |||| | ||| ||||||||||| Sbjct 14964701 TAATCATCCTCTCAGACCAACTATTGACCATCGCCATGGTATGTTATTGCCTCACCAACT 14964760 Query 187 AGCTAATCCGAC 198 |||||||| ||| Sbjct 14964761 AGCTAATCAGAC 14964772 >seq4 Length=52388848 Score = 118 bits (130), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || ||||||||||| ||||||| || |||| | ||| ||||||| Sbjct 44291286 CACGTGGCATTG-CTCTGTCAGGCTTTCGTCCATTGTAGAAAATTCTC-ACTACTGCCTC 44291343 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC---CA 145 | |||||||| | | | |||||| |||||||||||| ||||||||| ||| | | Sbjct 44291344 CTGTAGGAGTGTAGGCTGTGTCTTAGTTCCAGTGTGGCTGATCATCGTCTTGGTCTCTTG 44291403 Query 146 GTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | | ||| |||||||||| || ||| ||| |||||||||||||| ||| Sbjct 44291404 GATCAAGATTGTCGCCTTGGAAAGTTATTGTCTCGCCAACTAGCTAATCAGAC 44291456 >seq7 Length=44630203 Score = 91.5 bits (100), Expect = 3e-16 Identities = 91/119 (76%), Gaps = 8/119 (7%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 || ||||||||| |||||| || ||||||||| |||||||||| ||||||||||| || Sbjct 5260419 TCTGGCTTTCGCTCATTGTGGAAAATTCCCCACCGCTGCCTCCCATAGGAGTCTGGGCCT 5260478 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 ||||||| || || |||||| | || || ||| ||| |||| | ||||||| Sbjct 5260479 TGTCTCA--------GTCACAAATCATCTTTTCGGATCAGCTACCGATCATTGCCTTGG 5260529 >seq1 Length=56831395 Score = 73.4 bits (80), Expect = 8e-11 Identities = 59/70 (84%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||| ||||| ||||||| || |||||| ||||||||||| Sbjct 4141890 CACGCGGCATTG-CTCCGTCAGGATTTCGTCCATTGTAGAAAATTCCCTACTGCTGCCTC 4141832 Query 89 CCGTAGGAGT 98 |||||| ||| Sbjct 4141831 CCGTAGAAGT 4141822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071987232480