Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-27 seq1191 123 2e-26 seq1190 122 7e-26 seq8 95.1 1e-17 >seq4 Length=52388848 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||| | ||| | | ||| ||| ||||||| ||||||||| Sbjct 42257756 CGAGTTGCAGCCTACAATCTGAACTGAGGACGAGTTTTTGGAGTTAGCTCACCCTCGCGG 42257697 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 42257696 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTTGCCCAGGGCATAAGGGGCAT 42257637 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||| ||||||||||||| || |||| Sbjct 42257636 GAGGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 42257597 Score = 111 bits (122), Expect = 1e-22 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| ||||| | || ||| || ||| ||| ||||||| |||||||| Sbjct 41861940 CGAGTTGCAGCCTACAGTTCGAACTGAGAACGTGTTTTTGGAGTTAGCTCATCCTCGCGG 41861881 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| | |||||||| ||||||| ||| |||||||| ||| Sbjct 41861880 GATTGCGATCCTTTGTCTCGTCCATTGTAGCACGTGTGTCACCCAGGGCATAAGGGGCAT 41861821 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || ||||||||||||||| ||||||||||||| || ||| Sbjct 41861820 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCA 41861782 Score = 77.0 bits (84), Expect = 3e-12 Identities = 111/159 (70%), Gaps = 11/159 (7%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| ||| |||||| |||| | | ||| ||| ||| || |||| ||||| Sbjct 41597741 GAGTTGCAGTCTATAATCCGAACTAAGGACGAGTTTTTGGAGCTAGTTCACCCTTGCGGG 41597800 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | | ||| ||| ||| |||| |||||| |||||||| |||| Sbjct 41597801 ATCATGATCCTTTGTCACATCCAGTGTAGCACGTGT-----------CATAAGGGGCATG 41597849 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||| ||||||| ||||||||||||| || |||| Sbjct 41597850 ATGACTTGATGTCATCCTCACCTTCCTCCGGCTTATCAC 41597888 >seq1191 Length=402558 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 295641 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 295699 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 295700 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 295759 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 295760 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 295799 >seq1190 Length=152218 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 100872 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 100813 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 100812 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 100753 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 100752 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 100713 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 134522 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 134581 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 134582 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 134641 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 134642 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 134681 >seq8 Length=47837022 Score = 95.1 bits (104), Expect = 1e-17 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||| || ||||||||| ||| | ||| ||| ||||||| |||| |||| Sbjct 13499074 CGAGTTTTAGCCTACAATCCAAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTTGCGG 13499015 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || | | ||| | |||||||| |||||| |||| | |||||||| ||| Sbjct 13499014 GATCGCAATCTTTTGTCTCGTCCATTGTAGCGCGTGTGTCGCCCAAGGCATAAGGGACAT 13498955 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || ||||||||||||||| ||||||||||||| || Sbjct 13498954 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTT 13498920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415995200270