Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1190 264 3e-68 seq1191 170 5e-40 seq13 156 1e-35 seq5 149 2e-33 seq4 118 3e-24 seq1 93.3 1e-16 seq7 84.2 5e-14 >seq1190 Length=152218 Score = 264 bits (292), Expect = 3e-68 Identities = 302/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 99998 ACCCGTAGGCCTTCTACCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 99939 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 99938 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 99879 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 99878 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 99819 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 99818 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 99770 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| || || ||| Sbjct 99769 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGTAGGTTCT 99712 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 99711 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 99669 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||| |||| ||||||||||||||| ||||| Sbjct 99668 TCCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCATCCTGAG 99625 Score = 264 bits (292), Expect = 3e-68 Identities = 302/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 135396 ACCCGTAGGCCTTCTACCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 135455 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 135456 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 135515 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 135516 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 135575 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 135576 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 135624 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| || || ||| Sbjct 135625 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGTAGGTTCT 135682 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 135683 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 135725 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||| |||| ||||||||||||||| ||||| Sbjct 135726 TCCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCATCCTGAG 135769 >seq1191 Length=402558 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 296923 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 296982 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 296983 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 297042 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 297043 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 297102 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 297103 CCAACTACCTAAT 297115 >seq13 Length=45874162 Score = 156 bits (172), Expect = 1e-35 Identities = 141/175 (81%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 22 TTCTTCATA-CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 || ||||| |||||||||| ||| | |||||||| ||||||| | | || |||||||| Sbjct 44926566 TTTTTCATTTCACGCGGCATTGCT-CGTCAGGCTTTCGCCCATAGCGGAAAATTCCCCAG 44926624 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 || |||||||||| |||||||| |||||||||||| ||||||||| | ||||||||| Sbjct 44926625 AGCGGCCTCCCGTAAGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGTAGATCATCCTCTT 44926684 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||||||||| ||| | |||| ||| || ||| || | |||||||||||||| Sbjct 44926685 GGACCAGCTACTAATCATTGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 44926739 >seq5 Length=42234498 Score = 149 bits (164), Expect = 2e-33 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | ||| | ||| | | |||||||||| ||||||||||| || Sbjct 14964584 ACCCGTAGGCCTTCTACCTTCACACAACATTGTTCCATCAGGCTTTCGCCCATTGTGAAA 14964643 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||| | |||||| | ||||||||||| | |||||||| | ||||||| | Sbjct 14964644 AATTCCCCATTACTGCCTTCTTTAGGAGTCTGGGTCAGGTCTCAGTCCTAGTGTGGTTAA 14964703 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||||||||| ||| || | ||||| ||| | ||| || | ||||||||| Sbjct 14964704 TCATCCTCTCAGACCAACTATTGACCATCGCCATGGTATGTTATTGCCTCACCAACTAGC 14964763 Query 191 TAATC 195 ||||| Sbjct 14964764 TAATC 14964768 >seq4 Length=52388848 Score = 118 bits (130), Expect = 3e-24 Identities = 138/184 (75%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||||| | | |||| ||||| ||| |||||||| || ||||||| || |||| Sbjct 44291272 AGGCCTTCTACCTTCACGTGGCATTGCTCTGTCAGGCTTTCGTCCATTGTAGAAAATTCT 44291331 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 | ||| |||||||| |||||||| | | | |||||| |||||||||||||||| ||||| Sbjct 44291332 C-ACTACTGCCTCCTGTAGGAGTGTAGGCTGTGTCTTAGTTCCAGTGTGGCTGATCATCG 44291390 Query 137 TCTCAGACCAGCTAGG-----GATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 ||| | | || || ||| ||||||| || | ||| | |||||||||||| Sbjct 44291391 TCTTGGTC--TCTTGGATCAAGATTGTCGCCTTGGAAAGTTATTGTCTCGCCAACTAGCT 44291448 Query 192 AATC 195 |||| Sbjct 44291449 AATC 44291452 >seq1 Length=56831395 Score = 93.3 bits (102), Expect = 1e-16 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | ||||| || || ||||||| || Sbjct 4141910 ACCCGTAGGCCTTCTACCTTCACGCGGCATTGCTCCGTCAGGATTTCGTCCATTGTAGAA 4141851 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGT 99 |||||| ||||||||||||||||| ||| Sbjct 4141850 AATTCCCTACTGCTGCCTCCCGTAGAAGT 4141822 >seq7 Length=44630203 Score = 84.2 bits (92), Expect = 5e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 || ||||| ||| ||||||| || ||||||||| |||||||||| ||||||||||| || Sbjct 5260419 TCTGGCTTTCGCTCATTGTGGAAAATTCCCCACCGCTGCCTCCCATAGGAGTCTGGGCCT 5260478 Query 108 TGTCTCAGT 116 ||||||||| Sbjct 5260479 TGTCTCAGT 5260487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222385441216