Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1190 322 1e-85 seq1191 266 1e-68 seq5 192 2e-46 seq13 168 2e-39 seq1 158 4e-36 seq4 127 6e-27 seq15 82.4 2e-13 >seq1190 Length=152218 Score = 322 bits (356), Expect = 1e-85 Identities = 278/342 (81%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 99807 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 99866 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 99867 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 99926 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| ||||||||| | || Sbjct 99927 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAAGGTAGA 99986 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | | ||||| |||||||||| | ||| Sbjct 99987 AGGCCTACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCCGGGGAAT 100046 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 100047 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 100106 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | | |||||||||| || |||||||| || |||||| Sbjct 100107 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGT 100147 Score = 322 bits (356), Expect = 1e-85 Identities = 278/342 (81%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 135587 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 135528 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 135527 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 135468 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| ||||||||| | || Sbjct 135467 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAAGGTAGA 135408 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | | ||||| |||||||||| | ||| Sbjct 135407 AGGCCTACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCCGGGGAAT 135348 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 135347 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 135288 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | | |||||||||| || |||||||| || |||||| Sbjct 135287 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGT 135247 >seq1191 Length=402558 Score = 266 bits (294), Expect = 1e-68 Identities = 258/327 (79%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 297115 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 297056 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 297055 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 296996 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 296995 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 296936 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 296935 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 296876 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 296875 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG-GGGGGGCAAGTGTTCTTCGGAATGA 296817 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 296816 CT-GGGCGTAAAGGGCACGTAGGCGGT 296791 >seq5 Length=42234498 Score = 192 bits (212), Expect = 2e-46 Identities = 254/350 (73%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| ||| || ||||||||||||||||||| ||| || | ||||| ||||| | || Sbjct 14964785 AGGAGGGACTCGTGTCTGATTAGCTAGTTGGTGAGGCAATAACATACCATGGCGATGGTC 14964726 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 | ||| | |||||||| |||| ||||| | | |||||||| | ||| ||||||| Sbjct 14964725 AATAGTTGGTCTGAGAGGATGATTAACCACACTAGGACTGAGACCTGACCCAGACTCCTA 14964666 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 | |||||| | |||||||| || |||||||||| ||||||||||| | ||| | | | Sbjct 14964665 AAGAAGGCAGTAATGGGGAATTTTTCACAATGGGCGAAAGCCTGATGGAACAATGTTGTG 14964606 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTA 387 ||| | |||||||| |||||| | || || | | | ||||| ||||| |||| Sbjct 14964605 TGAAGGTAGAAGGCCTACGGGTCATGAACTGCTTTTCCCGGAGAAGAACCAATGATGGTA 14964546 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447 |||| |||| | ||||||| |||||||||| || ||||| || ||| || | Sbjct 14964545 TCCAAGGAATAAGCATCAGCTAACTTTGTGCCAGCAGTCGTGGTAAGACAGAGGATGCAA 14964486 Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 || |||| |||| || | ||| |||||| | |||||||| || |||| Sbjct 14964485 GCATTATTTGGAA-TAATTGGGTGTAAAGCATTTGTAGGTGGCTTTTTAA 14964437 >seq13 Length=45874162 Score = 168 bits (186), Expect = 2e-39 Identities = 142/173 (82%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||| | ||| |||||| | Sbjct 44926746 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCAATGATTAGTAGCTGGT 44926687 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| ||||| ||||| ||| |||||||||||| ||| |||| |||||||||| | Sbjct 44926686 CCAAGAGGATGATCTACCACACTGGGACTGAGACACGGCCCAGACTCTTACGGGAGGCCG 44926627 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGA 332 | |||||||| || | | |||||| ||||||||| | ||||| ||||||||| Sbjct 44926626 CTCTGGGGAATTTTCCGCTATGGGCGAAAGCCTGACG-AGCAATGCCGCGTGA 44926575 >seq1 Length=56831395 Score = 158 bits (174), Expect = 4e-36 Identities = 183/242 (76%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 ||||| ||||||||||||||||| |||||| || ||||||| | ||| ||||| | ||| Sbjct 4141820 AAACTTCTACGGGAGGCAGCAGTAGGGAATTTTCTACAATGGACGAAATCCTGACGGAGC 4141879 Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG-GAAGA--T 377 || ||||||||| | |||||||| |||||| | || ||| | | || | ||||| Sbjct 4141880 AATGCCGCGTGAAGGTAGAAGGCCTACGGGTCATGAACTTCTTTTC-CAGGAGAAGAAGC 4141938 Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||||| || | ||| |||| || |||||| ||||||||||||||||||| || Sbjct 4141939 AATGACGATATAAGGGGAATAAGCATCGACTAACTCTGTGCCAGCAGCCGCGGTAAGACA 4141998 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || || |||||| |||| | | |||||||||| || || |||| || |||| Sbjct 4141999 GAGGATGCAAGTGTTATCTAGAATGA-TTGGGCGTAAAGCGTCTGTGTGTGGCTTTTTAA 4142057 Query 498 GT 499 || Sbjct 4142058 GT 4142059 >seq4 Length=52388848 Score = 127 bits (140), Expect = 6e-27 Identities = 144/190 (76%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCC--- 216 ||||||||||||||||||||| || || ||| |||||||||| ||| | || Sbjct 44291459 CGCGTCTGATTAGCTAGTTGGCGAGACAATAACTTTCCAAGGCGACAATCTTGATCCAAG 44291400 Query 217 -GACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAG 275 |||| ||| | ||||| |||||| ||||||| |||||| | | | |||||||| |||| Sbjct 44291399 AGACC-AAGACGATGATCAGCCACACTGGAACTAAGACACAGCCTACACTCCTACAGGAG 44291341 Query 276 GCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCG 335 |||| ||| | |||| || ||||||| | ||||||||| ||||| ||| ||||| | Sbjct 44291340 GCAGTAGT-GAGAATTTTCTACAATGGACGAAAGCCTGACAGAGCAATGCCACGTGAAGG 44291282 Query 336 ATGAAGGCCT 345 |||||||| Sbjct 44291281 TAGAAGGCCT 44291272 >seq15 Length=51756343 Score = 82.4 bits (90), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| ||| ||||| ||||||||| |||||||| || Sbjct 2155746 AATGACGGTATCTGGGGAATAAGCATCGGTTAACTCTGTGCCAGCAAGCGCGGTAAGACA 2155687 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||| ||||||||||| | | ||||||||| ||| ||| ||| || |||| Sbjct 2155686 AAGGATGCAAGCATTATCCGGAATGA-TTGGGCGTAAA-GGTCTGTAAGTGACTTTTTAA 2155629 Query 498 GT 499 || Sbjct 2155628 GT 2155627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497582163584