Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1190 125 2e-26 seq1191 116 8e-24 seq13 80.6 6e-13 seq1 75.2 2e-11 >seq1190 Length=152218 Score = 125 bits (138), Expect = 2e-26 Identities = 148/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| ||||| ||||||||| | | ||| |||| || Sbjct 100012 AAAAGAAGTTCATGACCCGTAGG-CCTTCTACCTTCACGCGGCATTGCTCCGTCAGGCTT 99954 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 99953 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 99894 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 99893 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 99834 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 99833 GCCTCACCAACTAGCTAAT 99815 Score = 125 bits (138), Expect = 2e-26 Identities = 148/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| ||||| ||||||||| | | ||| |||| || Sbjct 135382 AAAAGAAGTTCATGACCCGTAGG-CCTTCTACCTTCACGCGGCATTGCTCCGTCAGGCTT 135440 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 135441 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 135500 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 135501 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 135560 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 135561 GCCTCACCAACTAGCTAAT 135579 >seq1191 Length=402558 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 296941 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 297000 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 297001 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 297060 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 297061 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 297120 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 297121 GCAGGCTCATCAAACAGCG 297139 >seq13 Length=45874162 Score = 80.6 bits (88), Expect = 6e-13 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||||| ||||||| | | ||| || ||| || ||| |||| | || ||||| || Sbjct 44926569 TTCAT--TTCACGCGGCATTGCTCGT-CAGGCTTTCGCCCATAGCGGAAAATTCCCCAGA 44926625 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 || |||||||||| |||| ||| |||||||||||| ||| ||||| || | |||||| Sbjct 44926626 GCGGCCTCCCGTAAGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGTAGATCATCCTCTTG 44926685 Query 227 GAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || | ||| ||| | | || ||| || || || | || |||| ||||| Sbjct 44926686 GACCAGCTACTAATCATTGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 44926738 >seq1 Length=56831395 Score = 75.2 bits (82), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| ||||| ||||||||| | | ||| |||| | Sbjct 4141924 AAAAGAAGTTCATGACCCGTAGG-CCTTCTACCTTCACGCGGCATTGCTCCGTCAGGATT 4141866 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 |||||||||| || ||||| ||||||||||||||||| ||||| Sbjct 4141865 TCGTCCATTGTAGAAAATTCCCTACTGCTGCCTCCCGTAGAAGTTT 4141820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068787270592