Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq15742 277 3e-72 seq9713 197 2e-48 seq28776 178 2e-42 seq28979 161 1e-37 seq20518 104 4e-20 >seq15742 Length=178311 Score = 277 bits (306), Expect = 3e-72 Identities = 175/187 (94%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 |||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 125255 AAAGGGTAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCTCA 125198 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCG 124 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125197 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCA 125138 Query 125 GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCA 184 | |||||||||||| |||||||||||||||||||||||||||||| |||| |||||| Sbjct 125137 AGCTTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCACGTGTGGCCCA 125078 Query 185 GAACATC 191 ||||||| Sbjct 125077 GAACATC 125071 >seq9713 Length=89002 Score = 197 bits (218), Expect = 2e-48 Identities = 168/202 (83%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || |||||| || | |||||||||| || || || ||| | ||||||||||||| | Sbjct 73465 GTGCAAAGGATAGAAAAGTAGTCAACGTGAACTA-ATAACTTGTACTTACTAGGAATT-C 73408 Query 61 CTCGTTGAAGA-CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 ||||||||| | |||||||||||||| |||||| | |||||||||||||||||||||||| Sbjct 73407 CTCGTTGAAAAACCAACAATTGCAATTATCTATTCTCATCACGATGAAATTTCAAAGATT 73348 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||| | |||| ||||||||||||||||||| || ||||| |||| | Sbjct 73347 ACCCGGGCCTGTCAGTCAAGAATATAGACTCGTTGAATACATTAGAGTAGCATCCGTGTG 73288 Query 180 GCCC-AGAACATCTAAGGGCAT 200 |||| | ||||||||||||||| Sbjct 73287 GCCCAAAAACATCTAAGGGCAT 73266 Score = 190 bits (210), Expect = 3e-46 Identities = 145/171 (85%), Gaps = 13/171 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| ||| |||||||| |||| |||||||||||| ||||||||||||||| Sbjct 74004 GTACAAAGGGCAGAGACATAGTCAACACGAG-TTGATGACTCGCACTTACTAGGAATTTC 73946 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 73945 -TCATTGAAGACCGACAATTGCAATGATCTATCCCCATCACAATGAGATTTCAAAGATTA 73887 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCG 171 | || ||| | |||||||||||||||||||||||||||| Sbjct 73886 CTCGAGCCTAT-----------GTAGACTCGTTGAATACATCAGTGTAGCG 73847 >seq28776 Length=557903 Score = 178 bits (196), Expect = 2e-42 Identities = 143/170 (84%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| | ||||| | ||||| |||||||| ||| |||||||||| | Sbjct 312998 GTACAAAGGGCAAGGACACAATCAACTCAAGCTT-ATGACTCGTGCTAACTAGGAATT-C 312941 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 312940 CTCGTTGAAAACCAAAAATTGCAATGATCTATCCCCATCACAATGAAGTTTCAAAGATTA 312881 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 ||| | || | ||||||| ||| | | ||||||||||| || ||||| Sbjct 312880 CCCAAGCTCGTTGACCAAGGTCATAAATTTGTTGAATACATTAGGGTAGC 312831 >seq28979 Length=191760 Score = 161 bits (178), Expect = 1e-37 Identities = 112/127 (88%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||||| ||||||| |||||||| ||||| |||||||||||| || ||||| Sbjct 132240 TACTCGGGCCTGTCAGCCAAGGCTATAGACTCATTGAACACATCAGTGTAGTGCTCGTGC 132181 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 132180 GGCCCGGAACATCTAAGGGCATCACAAACCTGTTATTGACTCAAACTTCCATGGCCTAAG 132121 Query 239 AGGCCAT 245 |||||| Sbjct 132120 CGGCCAT 132114 >seq20518 Length=2562168 Score = 104 bits (114), Expect = 4e-20 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||| ||||| ||| |||||||||||| ||||| ||| ||| | |||||||||||||| | Sbjct 183145 GTACGAAGGGTAGGAACGTAGTCAACGTGAGCT-GATAACTTGTGCTTACTAGGAATT-C 183088 Query 61 CTCGTTGAAGA-CCAACAATTGCAATGATCTAT 92 ||||||||| | |||||||||||||| |||||| Sbjct 183087 CTCGTTGAAAAACCAACAATTGCAATTATCTAT 183055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751758356550