Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4867 167 1e-38 seq32502 161 4e-37 seq24023 161 4e-37 seq32186 147 9e-33 seq31707 138 5e-30 seq13909 134 6e-29 seq11995 132 2e-28 seq6656 102 3e-19 >seq4867 Length=107059 Score = 167 bits (184), Expect = 1e-38 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 54097 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 54156 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| |||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 54157 TAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 54216 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 54217 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 54261 >seq32502 Length=299063 Score = 161 bits (178), Expect = 4e-37 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 493 GGTGGGAACCCG-TGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGA 550 ||||||| ||| || |||| ||||| ||||||| |||||| | | || || || || Sbjct 263285 GGTGGGATCCCCCTGTGGGTTGCACCGCCGACCGACCCTGATCTTCTGTGAAGGGTTCGA 263226 Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 || |||||||| |||| |||||||||||||||||||||||||||||| ||| |||||| Sbjct 263225 GTGAGAGCATACCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCC 263166 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 ||||||||||||| ||||||| | || | | || |||| |||||| | ||| | || Sbjct 263165 AGAGGAAACTCTGTTGGAGGCCCACAATGATACTAACGTGTAAATCGTTTGTCTGACTTA 263106 Query 671 GGTATAGGGGCGA 683 |||||||||| || Sbjct 263105 GGTATAGGGGTGA 263093 >seq24023 Length=122681 Score = 161 bits (178), Expect = 4e-37 Identities = 210/283 (74%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || |||||| || ||||||||||||||||||| |||| | ||| ||| || | | Sbjct 68130 CGTCCCGTCATGAAACACGGACCAAGGAGTCTGACATGTGTGCAAGTCAACAGGCGAGTA 68071 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGGA--GGTGGGAACCCG--TGAGGGTGCACCATC 519 |||| | | || ||| || | | ||||||| ||| | || ||||||| | Sbjct 68070 AACCTATAAGG----TGCAAG-GAGCTTATTGGTGGGATCCCCCTTTGGGTTGCACCACC 68016 Query 520 GACCGATCCTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578 | |||| |||||| | || | |||| ||| ||| |||||||| || ||||||| ||||| Sbjct 68015 GGCCGACCCTGATCTTCTGTGAATGG-TTTAAGTGAGAGCATACCTATTGGGACTCGAAA 67957 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 ||||||||||||||||||| || |||||||| |||||||| |||||||| |||| Sbjct 67956 GATGGTGAACTATGCCTGAGCGGGACAAAGCCAGATGAAACTCTAGTGGAGGCCTGCAGT 67897 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | | || ||||||||||| | ||| | |||||||||||||| Sbjct 67896 GATACTAACGTGCAAATCGTTTGTCTGACTTGGGTATAGGGGC 67854 >seq32186 Length=183720 Score = 147 bits (162), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 407 GCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAA 465 ||||||||| ||||| |||||||||||||||||| |||||||| |||| | ||| Sbjct 86956 GCCCGTCTTAAAACACAGACCAAGGAGTCTAACATGCATGCGAGTCAATGGGCGAGTAAA 87015 Query 466 CCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCGAC 522 ||| | ||| || ||| ||| || ||||| ||| | | |||| |||| | || Sbjct 87016 CCCATAATGCGGAAGGAAGCTGATTGG---TGGGATCCCCTTGTGGGTTGCACGACTGAT 87072 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | | | |||| | | || || ||||||| |||| ||| | ||||||||| ||||||| Sbjct 87073 CAACCTTGATCTTCTATGAAGGGTTTGAGTGAGAGTATACATATTGGGACCCAAAAGATG 87132 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||| |||||| |||| |||||||||||||||||||||||||||||| Sbjct 87133 GTGGACTATGTCTGAGCGGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 87180 >seq31707 Length=1678040 Score = 138 bits (152), Expect = 5e-30 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 1530057 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 1530116 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| |||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 1530117 TAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 1530176 Query 155 TGGAAAGAG 163 || |||||| Sbjct 1530177 TGAAAAGAG 1530185 >seq13909 Length=907344 Score = 134 bits (148), Expect = 6e-29 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || ||||||| | || ||| || ||||||||||||||||| |||| ||||||| | Sbjct 274599 GAAGGGTTTGAGTGATAGAATACCTTTTGGGACCCGAAAGATGATGAATTATGCCTAAGC 274658 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||||||||| ||||||||||||||||||| | |||||| | ||| |||| ||||| | Sbjct 274659 AGGGTGAAGCTAGAGGAAACTCTGGTGGAGTCCTGCAGCGATACTGACGTGTAAATCATT 274718 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 | | | ||||||||| |||||| Sbjct 274719 CATATGACTTGGGTATAAGGGCGA 274742 >seq11995 Length=126909 Score = 132 bits (146), Expect = 2e-28 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 || |||| | |||||| |||||||||||| |||||||||||||||||||| | || || Sbjct 30856 TTCGAGTGAAAGCATACCTGTTGGGACCCAAAAGATGGTGAACTATGCCTAAGTAAGGCA 30915 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 | || |||||||||||| |||| ||||| || | | ||| |||||||||| ||||| | Sbjct 30916 ATGCTAGAGGAAACTCTAGTGGGGGCTCATAGTGATACTGACGTGCAAATCATTCGTCTA 30975 Query 666 ATTTGGGTATAGGGGCGA 683 | ||||||||| ||| || Sbjct 30976 ACTTGGGTATAAGGGTGA 30993 >seq6656 Length=5245635 Score = 102 bits (112), Expect = 3e-19 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 69 AATGGGA-GGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGT 127 ||| ||| |||||||| | || || |||||||| || | |||||||||||||| |||||| Sbjct 78783 AATCGGACGGTAAATTCCGTCCAAGGCTAAATACTGACGAGAGACCGATAGCGAACAAGT 78724 Query 128 AGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 | | || ||||||||||| ||| || ||||||||| ||| || || |||||| ||| Sbjct 78723 ACCGCGAGGCAAAGATGAAAAAGACTCTGAAAAGAGAGTCAAAGAGGACTTGAAATGGTT 78664 Query 188 GAAAGGGA 195 ||||| Sbjct 78663 AGGAGGGA 78656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079288503500