Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq30937 170 3e-40 seq11981 140 5e-31 seq13785 122 1e-25 seq365 104 3e-20 seq8693 95.1 2e-17 seq7561 95.1 2e-17 seq4760 93.3 6e-17 seq30545 91.5 2e-16 seq32717 87.8 2e-15 seq24413 87.8 2e-15 seq21963 77.0 5e-12 seq21046 73.4 5e-11 >seq30937 Length=4778 Score = 170 bits (188), Expect = 3e-40 Identities = 191/253 (75%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||| ||| || ||||| || |||| | || || ||| Sbjct 1061 TTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 1119 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC-- 119 | ||||||||||| |||||||| || | || | |||||||| ||| |||| Sbjct 1120 GTGCTGTGTTTTTAATAAACAGTTGCAGCGGCCTGGTATCTGCGACTGCCAATAGCTTTG 1179 Query 120 ---AACACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | || ||| |||||| | | || ||||||||||||||||||| |||||||| Sbjct 1180 TAGAGCATGTCTACTCACCATCGGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTG 1239 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| | || ||||| | | | |||||| |||||||||||||||||||||||| Sbjct 1240 CCTAGTTCCTTCAGCAGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTG 1299 Query 236 TCGGTTTACGGTA 248 ||||||| |||| Sbjct 1300 TCGGTTTCGGGTA 1312 >seq11981 Length=1035870 Score = 140 bits (154), Expect = 5e-31 Identities = 180/245 (73%), Gaps = 24/245 (10%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 847067 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 847009 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 847008 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 846962 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 846961 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 846908 Query 186 TAACCACAGTTCACCCGAACGCCT-TAG-TATTCTCTACCTGACCACCTGTGTCGGTTTA 243 || | |||| | || ||||| ||| |||||||||||| |||||||||||||||| Sbjct 846907 TAGAGAGAGTTGTCTCG--CGCCTCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTC 846850 Query 244 CGGTA 248 |||| Sbjct 846849 GGGTA 846845 >seq13785 Length=113992 Score = 122 bits (134), Expect = 1e-25 Identities = 175/243 (72%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| | ||||||||||| ||||| | ||||||||| ||||| ||| | | | || Sbjct 107664 CCTTCTAGCACCGGGCAGGTGTCAGACTTTATACATCGTGTTACCA-CTTAGTAGAGTCC 107606 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | ||||||| ||||||||||||| ||| || | | ||| | | | |||| | Sbjct 107605 TATGTTTTT-GTAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 107549 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||| ||||||| ||| ||||||||||| ||||| Sbjct 107548 T--------AGGAGAG-CACCCCTTCTCCCAAAGTTACAGGGTCATTTTGCCGAGTTCCT 107498 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | || |||| | | | |||| |||||| ||||| || ||||||||| ||||| | Sbjct 107497 TCAACATGGTTCTCTCAAGCGCCCTAGTATAATCTACTTGTTCACCTGTGTTGGTTTGGG 107438 Query 246 GTA 248 ||| Sbjct 107437 GTA 107435 >seq365 Length=174009 Score = 104 bits (114), Expect = 3e-20 Identities = 91/110 (83%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||| | ||||||||||||| |||| | ||| | Sbjct 145412 GGCACCCCTTCTCCCGAAGTTACGGGACTATTTTGCCGAATTACTTAGAGAGAGTGGTCT 145353 Query 201 CGAACGCCT-TAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||||| ||| |||||||||||| |||||||||||||||| |||| Sbjct 145352 CG--CGCCTCTAGGTATTCTCTACCTATCCACCTGTGTCGGTTTCGGGTA 145305 >seq8693 Length=3776309 Score = 95.1 bits (104), Expect = 2e-17 Identities = 162/235 (69%), Gaps = 20/235 (9%) Strand=Plus/Minus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||| ||||| ||||||| || |||||| | ||||| | ||| || |||| ||||||| Sbjct 747027 CACTGGGCAAGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAAGACCAGTGTTTT 746969 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 | |||||||||| || | || |||||| | || | || Sbjct 746968 TGGTAAACAGTCACTCGGGCTTGGTCACTGCGATCCCCT-------------TTGTG--- 746925 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACA 193 || || ||||||||| |||| |||||||||| | |||||||||| ||||||| | | Sbjct 746924 -AGGAG--GCACCCCTTTTCCCAAAGTTACGGGACTATTTTGCCGAGTTCCTTAGAGAGA 746868 Query 194 GTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| | || | || |||||||||||||| | || ||||||||||| |||| Sbjct 746867 GTTGTCTCGCGCCTCTAAGTATTCTCTACCTATCTACTTGTGTCGGTTTCGGGTA 746813 >seq7561 Length=57822 Score = 95.1 bits (104), Expect = 2e-17 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 |||||||||||||||||| |||| |||||||| | ||||||| | |||| | || | Sbjct 5657 CCCTTCTCCCGAAGTTACAGGGCTATTTTGCCAAGTTCCTTACAGAGAGTTGTCTCGCGC 5598 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 ||| ||||||||||||| |||||||||||||||| Sbjct 5597 CCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 5561 >seq4760 Length=2462692 Score = 93.3 bits (102), Expect = 6e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||| ||||||| ||||| ||||||| || ||||||| | | || | Sbjct 2260103 GGCACCCCTTCTCTTGAAGTTATGGGGCTATTTTGCAGAGTTCCTTAGAGAGAATTGTCT 2260044 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 || | ||| |||||||||||||| |||||||||| ||||| ||| Sbjct 2260043 CGTTCCCCTAAGTATTCTCTACCTACCCACCTGTGTTGGTTTTCGG 2259998 >seq30545 Length=481101 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||| |||||| |||||||||||||| ||||||| || ||||||| | |||| | Sbjct 72180 GGCACCTCTTCTCTCGAAGTTACGGGGCTATTTTGCTGAGTTCCTTAGAGAGAGTTGTCT 72239 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||| ||||| |||||||||| ||||| |||| Sbjct 72240 CGTGCCCCTAGGTATTCTTTACCTACCCACCTGTGTTGGTTTCGGGTA 72287 >seq32717 Length=16798 Score = 87.8 bits (96), Expect = 2e-15 Identities = 168/244 (69%), Gaps = 24/244 (10%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| ||| ||||| || |||| || |||||| | ||||| | ||| | |||| Sbjct 2434 CCTTCGGGCACTGGGCAAGCATCAGCCCCCATACATGGTCTTAC-GACTTTGAGAAGACC 2492 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| ||| || || ||||| | Sbjct 2493 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTAGTCACTACGACCCCT-------------- 2538 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || |||||||||||||||||||||| |||| ||||| | | ||||| Sbjct 2539 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACAGGGCTATTTT-TCAAGTTCCT 2591 Query 186 TAACCACAGTTCACCCGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 || | |||| | || || ||||| ||||||||||||| ||||||||| | ||| Sbjct 2592 TAGAGAAAGTTGTCTCGCAC-CCTTAGGTATTCTCTACCTACCCACCTGTGCCAATTTCG 2650 Query 245 GGTA 248 |||| Sbjct 2651 GGTA 2654 >seq24413 Length=85268 Score = 87.8 bits (96), Expect = 2e-15 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||| |||||||||||| | |||| ||| ||| ||| |||||| | Sbjct 45671 GGCACCCCTTCTCCAAAAGTTACGGGGCTA-TTTGTCGAGTTCTTTAGAGACAGTTGTCT 45613 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || ||| ||||||||||||| ||||| ||||||||||| Sbjct 45612 TGTACCCCTAGGTATTCTCTACCT-ACCACTTGTGTCGGTTT 45572 >seq21963 Length=863573 Score = 77.0 bits (84), Expect = 5e-12 Identities = 71/89 (80%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| | || |||| | ||||| ||| ||| | ||| Sbjct 272979 CTTCCAGCACCGGGCAGGTGTCAGACTCTAAACATTGTGTTACCA-CTTAGCAGAGTCCT 272921 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 ||||||||| |||||||||||| ||| || Sbjct 272920 GTGTTTTTAATAAACAGTCGCTACCCCCT 272892 >seq21046 Length=758784 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| | ||| ||||||||||||| || ||||||| | |||| || | | ||| |||| Sbjct 35414 CCTTACGACACTGGGCAGGCGTCAGCCCCTATACATGGTCTTA-CGACATTGCAGAGACC 35356 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 |||| |||| |||||||||||| Sbjct 35355 TGTGCTTTTGGTAAACAGTCGC 35334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694176865410