Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq28979 178 2e-42 seq4081 161 2e-37 seq5088 158 2e-36 seq6857 111 3e-22 seq33039 91.5 2e-16 >seq28979 Length=191760 Score = 178 bits (196), Expect = 2e-42 Identities = 175/226 (77%), Gaps = 24/226 (11%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| || |||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 132198 TCAGTGTAGTGCTCGTGCGGCCCGGAACATCTAAGGGCATCACAAACCTGTTATTGACTC 132139 Query 76 AAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGCC----------AC 123 |||||||||| | || |||| | ||||||||| ||||||| | | || Sbjct 132138 AAACTTCCATGGCCT--AAGCGGCCATAGTCCCTATAAGAAGTTGGTCGTGGTGGGTTAC 132081 Query 124 CAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 | | |||| ||||||||| ||| | ||||||| || |||| |||||||| Sbjct 132080 CCCCACATA---------GCTATTTAGTAGGCTGAGGTCTCATTTGTTAATAGAATTAAC 132030 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 ||||||||| |||||||||||||||||| |||| ||||||||||| Sbjct 132029 CAGACAAATTGCTCCACCAACTAAGAACGACCATACACCACCACCC 131984 >seq4081 Length=1549637 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | ||||||||||||||| | ||||||| ||||||||||| ||||||| Sbjct 399533 CTATTTAGCAGCCTGAGGTCTCGTTCGTTAACAGAATTAATCAGACAAATCATTCCACCA 399592 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||| Sbjct 399593 ACTAAGAACGGTCATGCACCACCACCCATAGAGTCAAGAAAGAGCTCTCAGTCTGTC 399649 >seq5088 Length=88676 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | ||||||||||||||| | ||||||| ||||||||||| ||||||| Sbjct 49072 CTATTTAGCAGCCTGAGGTCTCGTTCGTTAACAGAATTAATCAGACAAATCATTCCACCA 49013 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||| || Sbjct 49012 ACTAAGAACGGTCATGCACCACCACCCATAGAGTCAAGAAAGAGCTCTCAGTCTATC 48956 >seq6857 Length=210371 Score = 111 bits (122), Expect = 3e-22 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||| ||||| ||||||||||||||||||| |||| |||| |||||||||||||| Sbjct 207120 TTAACCAGATAAATCGCTCCACCAACTAAGAACGGTCATGTACCATCACCCATAGAATCA 207061 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||| || || Sbjct 207060 AGAAAGAGCTCTCAAGCTCTC 207040 >seq33039 Length=312931 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 || |||| || |||| | |||||| |||||| |||||||||||||||| || || ||| Sbjct 83712 AGTTCTCATT-GTTAACAAAATTAATTAGACAAGTCACTCCACCAACTAAAAATGGTCAT 83654 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | | || |||||||| ||||||||||||| | | | |||||| Sbjct 83653 GTAACAACACCCATAAAATCAAGAAAGAGTTCTTATTCTGTC 83612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796543960770