Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq31885 417 1e-114 seq20709 417 1e-114 seq11995 235 9e-60 seq22226 228 1e-57 seq16956 75.2 2e-11 seq30937 73.4 7e-11 >seq31885 Length=151893 Score = 417 bits (462), Expect = 1e-114 Identities = 269/293 (92%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 66539 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 66597 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 66598 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 66657 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66658 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 66717 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 66718 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 66777 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| ||||||||||||||||||||||| |||||| |||| |||||| Sbjct 66778 CAAATTCCGAAGGACTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 66830 >seq20709 Length=73818 Score = 417 bits (462), Expect = 1e-114 Identities = 269/293 (92%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 27444 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 27386 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 27385 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 27326 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27325 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 27266 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 27265 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 27206 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| ||||||||||||||||||||||| |||||| |||| |||||| Sbjct 27205 CAAATTCCGAAGGACTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 27153 >seq11995 Length=126909 Score = 235 bits (260), Expect = 9e-60 Identities = 238/301 (79%), Gaps = 13/301 (4%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTC-TC 59 ||||| | ||||||| ||| ||| || |||| | ||||||||||||||| |||| || Sbjct 32355 TACTAGGTTGAATTACTATTCTGGC-ACTATCATTAATAGGGTAAAACTAACATGTCCTC 32297 Query 60 ATG-AC--GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 | || |||||||||||| ||||| ||||||||| ||||||||| |||||||| ||| Sbjct 32296 TCGTACTAGGTCTAAACCCAACTCACATTCCCTATTGGTGGGTGAAAAATCCAACACTTG 32237 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA-TCAAAAAGCA---AC 172 ||||| |||||| |||||||| | |||| ||||| | | | |||| | | | || Sbjct 32236 GTGAATTTTGCTTCATAATGATAGGGAAAGCCAACATC-ATGCACTCAATAGGGACACAC 32178 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 | | ||||||||||||||||| |||||| |||| ||| ||||||||||||| |||| Sbjct 32177 TTGG---TGAACGCTTGGCTGCCATAAGCCATTTATTCCTATGGTAACTTTTCTAACACC 32121 Query 233 TCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||| ||||| | || ||||||||||||||||| || | ||||||||||||||||| Sbjct 32120 TCTAGCTTCAAAATCTGAAAGACTAAAGGATCGATAGACCCCGCTTTCATGGTTTGTATT 32061 Query 293 C 293 | Sbjct 32060 C 32060 >seq22226 Length=229725 Score = 228 bits (252), Expect = 1e-57 Identities = 166/192 (86%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| Sbjct 143381 ATTAGTGGGTGAACAATCCAACACTTGGAAAATTCTGCTTCACAATGATAGGAAGAGCCA 143440 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||| |||||||||||||||||| ||| |||||||| ||||| |||||||||||| ||||| Sbjct 143441 ACACCGAAGGATCAAAAAGCAATGTCACTATGAACACTTGGATGCCACAAGCCATTTATC 143500 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||| || ||| |||| | ||||||||||| |||||||||||||||||| Sbjct 143501 CCTGTGGTAACT----TGACACGTCTAACTTCAAATTTCGAAGGACTAAAGGATCGATAG 143556 Query 270 GCCACACTTTCA 281 |||| |||||| Sbjct 143557 GCCATGCTTTCA 143568 >seq16956 Length=337993 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 |||||||||||||||| | | ||| | ||||| ||||||| || ||||| || ||| Sbjct 304722 GGTAAAACTAACCTGTTTTAAGACTGCCTAAATTCAGCTCAAATTTTCTATTGGT-GGTA 304780 Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138 ||||||||||| || | ||||||| |||| ||||| Sbjct 304781 AACAATCCAACACTAAATGAATTCTTCTTCACGATGAT 304818 >seq30937 Length=4778 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 315 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACC 374 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| ||| || | | |||| || ||||||||||||| | |||| | | Sbjct 375 CTTGGGACCTGCTTCAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCAAACACC 431 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| ||| ||||| Sbjct 432 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTTT 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854116595520