Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq4996 360 4e-97 seq4141 196 1e-47 seq7528 154 3e-35 seq7238 149 1e-33 seq32717 141 2e-31 seq21399 105 1e-20 seq14257 87.8 4e-15 seq31919 82.4 2e-13 >seq4996 Length=541 Score = 360 bits (398), Expect = 4e-97 Identities = 284/335 (85%), Gaps = 8/335 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| | ||| ||||||| |||||||||||||| |||||||||||| || | ||| Sbjct 112 CTTTACAACCAAAAGGCCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGGTTGCCCCC 169 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 170 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCCGGACCGTGTCTCAGTTCCGG 229 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| || Sbjct 230 TGTGACTGATCATCCTCTCAGACCAGTTACAGATCGTCGCCTTGGTAGGCCTTTACCCCA 289 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| || ||||||||||| ||| ||||| | | |||| ||| Sbjct 290 CCAACTAGCTAATCTGATTTAGGCTCATCTAATA--GCAAGAGC--TTGCGCCCC--CTT 343 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||||| |||||||||||||| |||||| | ||||||||||||| || Sbjct 344 TCACCCGTAGGTCGTATGCGGTATTAATTCGAGTTTCCCCGAGCTATCCCCCACTACTAG 403 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||||| ||||||||||||||||| || Sbjct 404 GCAGATTCCTAAATGTTACTCACCCGTCCGCCACT 438 >seq4141 Length=628696 Score = 196 bits (216), Expect = 1e-47 Identities = 146/170 (86%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 193227 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 193285 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| ||| |||| |||||||||||| |||||| | Sbjct 193286 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGTTGATCATCCTCTTGGACCAGCT 193345 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || ||| | |||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 193346 ACTAATCATTGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 193395 >seq7528 Length=2495505 Score = 154 bits (170), Expect = 3e-35 Identities = 134/165 (81%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || ||||| ||||||||||||| || |||| |||||||||||| Sbjct 1571327 CACGTGGCATTG-CTACGTCAGGATTTCGCCCATTGTGGAAAATTCATCACTGCTGCCTC 1571385 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||| |||| ||| ||||||| | |||||||| |||||||||||| |||||| | Sbjct 1571386 CCGTAAGAGTTTGGGTTATGTCTCAATCCCAGTGTGGTTGATCATCCTCTTAGACCAACT 1571445 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 || ||| |||||||||| || ||| |||||||||||||||||| Sbjct 1571446 ACTAATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAAT 1571490 >seq7238 Length=61032 Score = 149 bits (164), Expect = 1e-33 Identities = 143/181 (79%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 14 AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT 73 || |||||| | | || | |||||||| | | |||| ||| || |||||| || ||| Sbjct 56492 AGGCCTTCTACC-CTCATGTGGCATTGGTTCG-TCAGAATTTTGCTCATTGTGGAAAATT 56549 Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 || | | |||||||| ||||||||| | |||||||||||| | ||||||| ||||||| Sbjct 56550 ACCTAATATTGCCTCCCATAGGAGTCTAGGCCGTGTCTCAGTCCTAGTGTGATTGATCAT 56609 Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 |||||||||| | || |||| || ||||||| ||| ||||||| |||||||||||||| Sbjct 56610 CCTCTCAGACTAACTATTGATCATCACCTTGGTAAGCTATTACCTTACCAACTAGCTAAT 56669 Query 194 C 194 | Sbjct 56670 C 56670 >seq32717 Length=16798 Score = 141 bits (156), Expect = 2e-31 Identities = 148/192 (77%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 10 CCGAAGACCTTCT---TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTC 66 ||| || |||||| |||||||| ||||| | |||||||||||||||||||| Sbjct 13268 CCGTAGGCCTTCTACCTTCACACAA----CATTGT-TCCATCAGGCTTTCGCCCATTGTG 13322 Query 67 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGAC 126 || |||||||| | |||||| | ||||||||||| | |||||||| | |||||| Sbjct 13323 AAAAATTCCCCATTACTGCCTTCTTTAGGAGTCTGGGTCAGGTCTCAGTCCTAGTGTGGT 13382 Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 | ||||||||||||||||| || || | ||||| |||| | ||| ||||||||||| Sbjct 13383 TAATCATCCTCTCAGACCAACTATTGACCATCGCCATGGTATGTTATTGCCTCACCAACT 13442 Query 187 AGCTAATCCGAC 198 |||||||| ||| Sbjct 13443 AGCTAATCAGAC 13454 >seq21399 Length=699063 Score = 105 bits (116), Expect = 1e-20 Identities = 91/110 (83%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || ||||||||||| ||||||| || |||||| ||| ||||||| Sbjct 383114 CACGTGGCATTG-CTCTGTCAGGCTTTCGTCCATTGTAGAAAATTCCC-ACTACTGCCTC 383171 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 138 | |||||||| | | | |||||| |||||||||||| ||||||||| ||| Sbjct 383172 CTGTAGGAGTGTAGGCTGTGTCTTAGTTCCAGTGTGGCTGATCATCGTCT 383221 >seq14257 Length=243754 Score = 87.8 bits (96), Expect = 4e-15 Identities = 90/119 (76%), Gaps = 8/119 (7%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 || ||||||||| |||||| || ||| ||||| |||||||||| ||||||||||| || Sbjct 27899 TCTGGCTTTCGCTCATTGTGGAAAATTTCCCACCGCTGCCTCCCATAGGAGTCTGGGCCT 27958 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 ||||||| || || |||||| | || || ||| ||| |||| | ||||||| Sbjct 27959 TGTCTCA--------GTCACAAATCATCTTTTCGGATCAGCTACTGATCATTGCCTTGG 28009 >seq31919 Length=2315549 Score = 82.4 bits (90), Expect = 2e-13 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||||| ||||||| || |||||||||||||||||| Sbjct 287419 CACGCGGCATTG-CTCCGTCAGGCTTTCGTCCATTGTAGAAAATTCCCCACTGCTGCCTC 287361 Query 89 CCGTAGGAGT 98 |||||| ||| Sbjct 287360 CCGTAGAAGT 287351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071644417600