Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq30937 455 8e-126 seq14405 178 3e-42 seq30545 143 7e-32 seq29866 120 8e-25 seq33041 89.7 1e-15 seq13718 87.8 4e-15 >seq30937 Length=4778 Score = 455 bits (504), Expect = 8e-126 Identities = 358/415 (86%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| || || ||||| ||||| ||| ||||||||||||| || | Sbjct 2139 CCTATCCACAAGTCATCCC-CTGGCTTTT-CAACGACAGTGGGTTCGGTCCTCCGGTAAC 2196 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| || ||||||||||| ||| ||||||||| | |||||| ||||||||| | Sbjct 2197 T-GTTACGTCAC-TTTCAACCTGCTCAT-GGATAGATCACTCGGTTT-CGGGTCTATA-C 2251 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 || || ||||||||||||| ||||||||| ||| | ||||| ||||||||||||||||| Sbjct 2252 CCTGCAACTAGACGCCCTATTAAGACTCGGTTTCC-CTACGGCTCCCCTATTCGGTTAAC 2310 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || || ||| ||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 2311 CTT-GCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACGGAACAT 2369 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || ||||| |||||||||| ||| ||||||||||| ||||||||||||||||| | || Sbjct 2370 -GTCCGCTCCGACTGCTTGTATGCACACGGTTTCAGGTTCTATTTCACTCCCCTCACAGG 2428 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 2429 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 2488 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| | ||||||||| |||| |||||| Sbjct 2489 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGAATTTCTCGTGTTCCGCCCTACT 2543 >seq14405 Length=96599 Score = 178 bits (196), Expect = 3e-42 Identities = 265/362 (73%), Gaps = 12/362 (3%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | || |||||| ||||||||||| |||||| ||||| | |||||| ||| Sbjct 36645 TCCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TCACCCAAGCTT- 36589 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| ||| ||||||||| ||| | || ||||||||| | | ||| | ||| Sbjct 36588 CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCTATAAGCAAT-GACAATT-GCC 36533 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197 || |||| ||||||| |||||| || | | ||| |||| | ||||| Sbjct 36532 CTGTGAAGATTCGCTTT-CGCTACAGCTTCGGTGGTTTCCCTTAACCAA-GCCACAACCT 36475 Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACT 257 || |||||| | |||| | ||| ||| ||| |||| || |||||||| Sbjct 36474 ATGAGTCGCCAGCTCATTCTTCAACAGGCACGTGGTCAGAGTCTCGAGCCTCCTCCCACT 36415 Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 ||||| || |||||||||| | ||||||||||||||| | |||||||||||| || Sbjct 36414 GCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCC 36356 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 |||||||||||||||| |||||||||||||| ||| |||||||||||||| | | |||| Sbjct 36355 TTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGT 36296 Query 378 CC 379 || Sbjct 36295 CC 36294 >seq30545 Length=481101 Score = 143 bits (158), Expect = 7e-32 Identities = 252/353 (71%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| ||||| |||||| ||||| ||||| | |||||| ||| || | || Sbjct 73161 TTCTTCAACATTAGTCAGTTCGGACCTCCTCTTAGTT-TCACCCAAGCTT-CATCTTGGT 73218 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||| ||||| ||| | ||| ||||| || | || ||| | |||||| |||| Sbjct 73219 CAT-GGACAGATCACCCAGGTTT-GGGTCCATAAGC-AGTGACAATT-GCCCTATGAAGA 73274 Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 |||||||| ||||||| |||| | ||| |||| | ||||||| || |||| | Sbjct 73275 CTCGCTTT-CGCTACGGCTCCGGTGGTTTCCCTTAACCAA-GCCACTGCCTATGAGTCAC 73332 Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACG 266 ||| |||| | ||| ||| | || ||| || |||||||||| || | Sbjct 73333 CGACTCATTCTTCAACAGGCATGCGATCAGAGTCTCGAGCCTCCTCCCACTGCATGGGAG 73392 Query 267 CATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCAC 326 | ||| |||||| | ||||||||| ||||| | ||| |||||||| || ||||||||| Sbjct 73393 CTTACAGTTTCATGTTCTATTTCAATCCCCGATGAGGG-TTCTTTTCACCCTTCCCTCAC 73451 Query 327 -GGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378 ||||||| ||||||||| || | ||| ||||||| ||||| | | ||||| Sbjct 73452 GGGTACTACTTCACTATCAGTAACCCAGGAGTATTTTGCCTTCCAAGGTGGTC 73504 >seq29866 Length=114638 Score = 120 bits (132), Expect = 8e-25 Identities = 225/318 (71%), Gaps = 11/318 (3%) Strand=Plus/Plus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 |||||| |||||| ||||| | | |||| ||| || | || ||| | ||||||| | | Sbjct 62089 GTTCGGACCTCCACTTAGTT-TCATCCAAGCTT-CATCTTGATCAT-GAATAGATCACTC 62145 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 | || |||||| || | || ||| | | ||| |||||||| ||||||||||| Sbjct 62146 AGGTT-CGGGTCCATAAGC-AGTGACAATT-GTCCTGTGAAGACTCG-TTTTCGCTACGA 62201 Query 166 CTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAA 223 || | ||| || | | ||||||| || ||| || | |||| | ||| | Sbjct 62202 TTCTGATGGTTTCCCTTCACCAA-GCCACTGCCTATGAGTAGCCAGCTCATTCTTCAACA 62260 Query 224 GGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATC 283 || |||| |||| | || ||||||||||||| ||||||||||||| | || Sbjct 62261 GGCACGCGGTCAAAGTCCTGAGCCTCCTCCCACTGCTTGGGAGCATACGGTTTCATGTTC 62320 Query 284 TATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATC 343 |||||||||||| | |||||||||||| || ||| |||||||||||| |||| |||| Sbjct 62321 TATTTCACTCCCTGATG-GGGGTTCTTTTCACCCTTCTCTCACGGTACTACTTCATTATC 62379 Query 344 GGTCAGTCAGTAGTATTT 361 ||||| |||| | || || Sbjct 62380 GGTCACTCAGGATTACTT 62397 >seq33041 Length=152846 Score = 89.7 bits (98), Expect = 1e-15 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||||| |||| || |||||||||||||||| |||||||||||| | || ||||||| Sbjct 17654 GGGGTTCCTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTTACCTAGGAGTATTT 17713 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| | ||||| || || | | ||| || | ||||||| Sbjct 17714 AGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACATGCACCATGCTACTCG 17772 >seq13718 Length=308058 Score = 87.8 bits (96), Expect = 4e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 273 GTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 332 |||||| | |||||||||||||| | |||||| ||||| || ||| |||| |||||| Sbjct 224247 GTTTCATGTTCTATTTCACTCCCGA-TGTGGGGTT-TTTTCACCCTTCTCTCATGGTACT 224304 Query 333 AGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGA 392 | |||||||||||| || ||||||||| |||| | | || ||| | ||||| | Sbjct 224305 AATTCACTATCGGTTGACTAGGAGTATTTAGTCTTGCAAGGTGATCCTTGCTAATTCACA 224364 Query 393 CAAAGTTTCTCGTGCTCCGTCCTACTC 419 || | || | |||| ||| | |||||| Sbjct 224365 CAGAATTCCACGTG-TCCCTACTACTC 224390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241188161280