Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq30937 196 1e-47 seq32393 190 5e-46 seq32717 172 1e-40 seq2738 168 2e-39 seq30545 167 5e-39 seq18627 159 8e-37 seq13785 154 3e-35 seq23780 102 2e-19 >seq30937 Length=4778 Score = 196 bits (216), Expect = 1e-47 Identities = 290/406 (71%), Gaps = 9/406 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||||| | || ||| | Sbjct 1539 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 1598 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||||| ||||| ||||| || ||||||| || |||||| | | Sbjct 1599 CTGGAACCCTTGGTCTTCCGGCGAACGGGCTTTTCACCCGTTTTGTCGTTACTCACGTCA 1658 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 |||||| | || | | ||||| || | | || || |||||| || |||| Sbjct 1659 GCATTCGCTCTTGTGATACCTCCAGCATGCTTT-ACAACACACCTTCACAGGCTTACACA 1717 Query 179 ACGCTCCCCTACCC----AACCACACAGGTTG--CCACAGCTTCGGCGGATAACTTAAGC 232 | ||||||||||| | | ||| | || |||||||||| || || ||| Sbjct 1718 ATGCTCCCCTACCACTTAATTGAAACAATTAAATCCGCAGCTTCGGCTCCTAGTTTGAGC 1777 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| Sbjct 1778 CCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGG 1837 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| ||||||||||||| | ||||| || ||||||| ||||||||| | Sbjct 1838 GTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTA 1897 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || ||||||||||||| | |||||| ||||||||||| Sbjct 1898 ACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1943 >seq32393 Length=1001144 Score = 190 bits (210), Expect = 5e-46 Identities = 160/194 (82%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| ||||||| | | || || || Sbjct 56418 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCA 56361 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| |||||||||| | || |||||||||||||||| Sbjct 56360 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTC 56301 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||||||| || |||||||||||||||| ||||| ||| Sbjct 56300 TGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGG 56241 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 56240 CTGTTTCCCTCTCG 56227 >seq32717 Length=16798 Score = 172 bits (190), Expect = 1e-40 Identities = 156/194 (80%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| ||| | | ||| |||| || | | || || || Sbjct 8626 CCACAGCTTCGGCATATAGCTTA-GCCTTGTT-CATCTTCGGTGCAAGAGCGCTCGATCA 8683 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| ||| |||||| | || |||||| |||||||||| Sbjct 8684 GTGAGCTATTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAACCTCTTGGTTGTCTA 8743 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| || |||| || |||||||||||||||| ||||||||| Sbjct 8744 TGCACCCCTACCTCCTTTATCATTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGG 8803 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 8804 CTGTTTCCCTCTCG 8817 Score = 104 bits (114), Expect = 5e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 ||| |||||| | || |||||| ||||||||| ||| | | || |||||| ||||||| Sbjct 8938 TGGTTGCTTCTAGGCAAACCTCTTGGTTGTCTCTGCACCCCTACCTCCTTTATCACTGAG 8997 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 8998 CGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 9044 >seq2738 Length=157879 Score = 168 bits (186), Expect = 2e-39 Identities = 151/187 (81%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 214 TTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCT 273 |||||| ||| |||| |||||| | ||| ||||||| | | || || ||||||||| Sbjct 89652 TTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCT 89595 Query 274 ATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACT 333 |||| |||||||||||||| ||| |||||| | || |||||||||||||||| ||| | Sbjct 89594 ATTATGCACTCTTTCAAGGGTGGATGCTTCTAGGCAAACCTCCTGGTTGTCTCTGCACCC 89535 Query 334 CCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTC 393 | || |||||| ||||||| || |||||||||||||||| ||||| |||||||||| Sbjct 89534 CTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTC 89475 Query 394 CCTCTCG 400 ||||||| Sbjct 89474 CCTCTCG 89468 >seq30545 Length=481101 Score = 167 bits (184), Expect = 5e-39 Identities = 155/194 (80%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||| ||| ||| |||| |||||| | ||| ||||| | | | || || || Sbjct 72735 CCACAGCTTTGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCACAAGAGCGCTCGATCA 72792 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||| ||| |||||||||| |||||||||| | | |||||||||||||||| Sbjct 72793 GTGAGCTATTATGCATTCTTTCAAGGGTGGCTGCTTCTAGGAAAACCTCCTGGTTGTCTC 72852 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||||||| || |||||||||||||||| ||||| ||| Sbjct 72853 TGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGG 72912 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 72913 CTGTTTCCCTCTCG 72926 >seq18627 Length=31601 Score = 159 bits (176), Expect = 8e-37 Identities = 286/408 (70%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 26133 CGACTACGCCCTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 26192 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACC--CGTCACACGCTACTCATGCC 118 ||||||||||| | ||| | | |||||| |||| ||| || |||||| ||| Sbjct 26193 GAGGAACCCTTGGGTTTTCGAGGCATTGGATTCTCACCAACGTTTG-CGTTACTCAAGCC 26251 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG 178 ||||||| || | || | | | | || | ||| |||| || || | || Sbjct 26252 GACATTCTCGCTTGAGCTAAGGCGAAAAG-CTCTCGCGCGGGTCCTTC-CCTCTAAGGCG 26309 Query 179 --ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 | ||||||||||| | || ||| | ||||| ||||||| ||| |||| || Sbjct 26310 GAATGCTCCCCTACCGATTCATTTTTACA---TCCCACAACTTCGGCAGATCGCTTA-GC 26365 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| | ||| |||| | | | || || |||||||||||||||||||||||||||| Sbjct 26366 CCCGTT-CATCTTCGGTGTAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGG 26424 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| | || || | ||||||||||| ||| | | || || ||| || ||| Sbjct 26425 GTGGCTGCTTCTAGGCAAATCGCCTGGTTGTCTCTGCACCCCTACCTCTTTTATCATTGA 26484 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || |||||||||||||||| ||||| | | |||||||||||| Sbjct 26485 GCGGTCATTTAGGGGCCTTAGCTGGTGATCCGAGTCGTTTCCCTCTCG 26532 >seq13785 Length=113992 Score = 154 bits (170), Expect = 3e-35 Identities = 149/190 (78%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 106834 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 106778 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 106777 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 106718 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 ||| |||||| ||| | ||| | ||||||| ||||||| | |||||||||| Sbjct 106717 TTCGATCACTTCCTTTTCCAGTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 106658 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 106657 GTTTCCCTCT 106648 >seq23780 Length=140289 Score = 102 bits (112), Expect = 2e-19 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| |||| || ||| ||||| | |||| | ||| ||||| | | |||| || || Sbjct 122046 CCACAACTTCAGCAGATCACTTA-GTCCCGTT-CATCTTCGGCACAAGAGCACTGGATCA 122103 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||| ||||||| |||||||||||||| |||| |||| | || |||||| |||| |||| Sbjct 122104 GTGGGCTATTATGCACTCTTTCAAGGGTGGCCACTTCTAGGCAAACCTCTTGGTAGTCTC 122163 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | | ||||| || |||| || ||| || |||||| | ||||| Sbjct 122164 TGCATCCCTGCCTCCTTCATCATTGAGCGGTCATTTAAGGACCTTAGTTAGTGATCCAAA 122223 Query 387 CTGTTTCCCTCTC 399 |||||||||||| Sbjct 122224 TTGTTTCCCTCTC 122236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177209390080