Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq30937 165 7e-39 seq31581 122 7e-26 seq18324 107 2e-21 seq14541 102 7e-20 seq20452 80.6 2e-13 seq3329 75.2 9e-12 >seq30937 Length=4778 Score = 165 bits (182), Expect = 7e-39 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||||||||||||| |||| || ||||||| | | |||| Sbjct 3956 TCGAGTTGCAGACTCCAATCCGGACTACGATAGGCTTTTTGAGATTAGCATCACATCGCT 4015 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||||||||| |||||||||| ||||||| |||||| | ||||||||| Sbjct 4016 GTGTAGCAACCCTCTGTACCTACCATTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCCA 4075 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||| ||||| ||||||||| ||||||||| Sbjct 4076 TGATGACTTGACGTCGTCCCCGCCTTCCTCCAGTTTGTCAC 4116 >seq31581 Length=344138 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||| | ||| | | ||| ||| ||||||| ||||||||| Sbjct 73775 CGAGTTGCAGCCTACAATCTGAACTGAGGACGAGTTTTTGGAGTTAGCTCACCCTCGCGG 73834 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 73835 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 73894 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 73895 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 73934 Score = 113 bits (124), Expect = 4e-23 Identities = 123/161 (76%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| |||||||||| ||| | ||| ||| || ||||||| |||| ||| Sbjct 39750 CGAGTTGCAGCCTACAATCCGAACTGAGGATGGGTTTT--GGAGTTAGCTCACCCTTGCG 39693 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| || Sbjct 39692 AGATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 39633 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||||||| || |||| Sbjct 39632 TGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 39592 >seq18324 Length=7974 Score = 107 bits (118), Expect = 2e-21 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| ||||| | || ||| || ||| ||| ||||||| |||||| | Sbjct 4741 CGAGTTGCAGCCTACAGTTCGAACTGAGAACGTGTTTTTGGAGTTAGCTCATCCTCGCAG 4800 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| | |||||||| ||||||| ||| |||||||| ||| Sbjct 4801 GATTGCGATCCTTTGTCTCGTCCATTGTAGCACGTGTGTCACCCAGGGCATAAGGGGCAT 4860 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || ||||||||||||||| ||||||||||||| || ||| Sbjct 4861 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCA 4899 >seq14541 Length=1818127 Score = 102 bits (112), Expect = 7e-20 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| || ||||||||| ||| | ||| ||| ||||||| |||| |||| Sbjct 1459006 CGAGTTGTAGCCTACAATCCAAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTTGCGG 1459065 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| | || | |||||||| ||| Sbjct 1459066 GATAGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGTCCAAGGCATAAGGGACAT 1459125 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCG 152 || ||||||||||||||| |||||||||||| Sbjct 1459126 GATGACTTGACGTCATCCTCACCTTCCTCCG 1459156 >seq20452 Length=187129 Score = 80.6 bits (88), Expect = 2e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 || |||| |||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 176442 ACATGTGTAGCCTGGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCC 176500 >seq3329 Length=248595 Score = 75.2 bits (82), Expect = 9e-12 Identities = 110/158 (70%), Gaps = 11/158 (7%) Strand=Plus/Minus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63 ||||| || ||| |||||| |||| | | ||| ||| ||| || |||| ||||| Sbjct 178362 AGTTGTAGTCTATAATCCGAACTAAGGACGAGTTTTTGGAGCTAGTTCACCCTTGCGGGA 178303 Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 | || ||| ||| ||| |||| |||||| |||||||| ||||| Sbjct 178302 TCACGATCCTTTGTCACATCCAGTGTAGCACGTGT-----------CATAAGGGGCATGA 178254 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||| ||||||| ||||||||||||| || |||| Sbjct 178253 TGACTTGATGTCATCCTCACCTTCCTCCGGCTTATCAC 178216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415866324900