Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq30937 172 9e-41 seq10806 114 2e-23 seq31919 107 3e-21 seq32717 80.6 4e-13 >seq30937 Length=4778 Score = 172 bits (190), Expect = 9e-41 Identities = 205/274 (75%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT-CCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| ||||| |||| | | | | |||| || | |||||||||| ||| Sbjct 4506 CCCACGCTTTCGAATCTCAGTGTCAAT-ATTATGCCAGGAAGCTGCCTTCGCCATCGGTA 4564 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| || |||||||||||||||||||||| ||||||| || |||||| | Sbjct 4565 TTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACTTCCCTCTCACATA 4624 Query 120 CTCAAGAAAAAC-AGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 || || | || ||| ||| |||||| |||| ||||| | |||||||| ||| Sbjct 4625 TTCTAGCACCACCAGTATCACATGCAGTTCCCAGGTTAAGCCCGGGGATTTCACATGTGA 4684 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| || ||||||| | |||||| |||| ||| |||| ||||||| || ||| Sbjct 4685 CTTAATGAGCCACCTACACTCGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTC 4744 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCG 272 |||||||||||||||||||||| ||||||||| Sbjct 4745 TGTATTACCGCGGCTGCTGGCACAGAGTTAGCCG 4778 >seq10806 Length=1062488 Score = 114 bits (126), Expect = 2e-23 Identities = 197/285 (69%), Gaps = 1/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| |||| |||||| | | |||||| || |||| | |||||||| | Sbjct 1037740 GCTTTCGTCTTTCAGTGTCAGTATCGGCCCAGCAGAGTGCTTTCGTCGTTGGTGTTCTTT 1037799 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || |||| ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 1037800 TCGATCTCTATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 1037859 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||| Sbjct 1037860 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGAACTTAAAA 1037919 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || | |||| | ||||||| |||||| | ||||||||| |||||| ||| || ||| Sbjct 1037920 AGCCACTTACA-GACCTTTACGCCCAATCATTCCGGATAATGCTTGCATCCTTTGTCTTA 1037978 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||| ||||||||| ||||| ||| ||||||||| ||| || Sbjct 1037979 CCGCGCTTGCTGGCACAGAGTTAACCGATGCTTATTCCCCAGATA 1038023 >seq31919 Length=2315549 Score = 107 bits (118), Expect = 3e-21 Identities = 197/284 (69%), Gaps = 10/284 (4%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCC-T 64 ||||||| ||| | |||||| | |||||||| || || ||| || ||||| | Sbjct 287762 GCTTTCGTCTCTCTGTGTCAGTGTCAGTCCAGCAGAGTGCTTTTGCCGTTGATGTTCTGT 287703 Query 65 CCGTATATCTACGCATTTCACCGCTACACACGG--AATTCCGATTGCCTCTCCAGCACTC 122 || || |||||||||||| | || ||||| | |||||| ||| || | | |||| Sbjct 287702 TCG-ATCTCTACGCATTTCCCTACTCCACACCGGAAATTCCCTCTGCTCCTACCGTACTC 287644 Query 123 AAGAAAAACAGTTTCAAATGCAGGCTATG---GGTTGAGCCCATAGTTTTCACATCTGAC 179 || |||||| | ||| |||| |||| ||||| || ||| ||| | || Sbjct 287643 CAGCTTGGTAGTTTCCACTGC---CTATCCAAGGTTAAGCCCTGAGATTTGACAACAAAC 287587 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | || | ||| | |||||| |||||| | || |||||| ||||| ||| Sbjct 287586 TTAAAATGCCACACACAGACGCTTTACGCCCAATCATTCTAGATAACACTTGCATCCTCT 287527 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 || ||||||||||||||||||| ||||||||| ||||||||| Sbjct 287526 GTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 287483 >seq32717 Length=16798 Score = 80.6 bits (88), Expect = 4e-13 Identities = 179/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | |||||| | ||| || |||||||| | | || |||| Sbjct 12955 CTCAGTGTCAGTATCGGCCCAGCAGAGTACTTTCACCGTTGGTGTTCTTTCCGATCTCTA 13014 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||||||| || ||| | |||||| |||| || | | |||| || |||| Sbjct 13015 TGCATTTCACCACTCCACCGGAAATTCCCTCTGCCCCTGCCGTACTCTAGCTTGGTAGTT 13074 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || | |||||||| | ||| | | | || || ||||| Sbjct 13075 TCCACCGCCTGTCCAAAGTTGAGCCTTGGGATTTGATGACGAAATTAAAAAGCCACCTAC 13134 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | ||||||||||||| | ||| |||| |||||| ||| || ||||| || |||| Sbjct 13135 AAATGCTTTACACCCAATTATTCCAAATAATGCTTGCATCCTCTGTCTTACCACGACTGC 13194 Query 256 TGGCACGTAGTTAGCCGTGGCTTATTCCT 284 |||||| ||||||| | |||||||||| Sbjct 13195 TGGCACAAAGTTAGCTGATGCTTATTCCT 13223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828533678070