Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4996 351 2e-94 seq4141 181 3e-43 seq7528 156 1e-35 seq32717 149 2e-33 seq7238 129 1e-27 seq21399 114 3e-23 seq31919 102 2e-19 seq14257 80.6 7e-13 >seq4996 Length=541 Score = 351 bits (388), Expect = 2e-94 Identities = 329/414 (79%), Gaps = 10/414 (2%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||||| ||||||||||||| |||||||||||||||| |||||| |||| || Sbjct 109 GTGCTTTACAACCAAAAGGCCTTCTTCACACACGCGGCATGGCTGGATCAGGGTTGCCCC 168 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 169 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCCGGACCGTGTCTCAGTTCCG 228 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||| ||| ||||||||||||||||| || ||||||||||| ||| |||| ||||||| Sbjct 229 GTGTGACTGATCATCCTCTCAGACCAGTTACAGATCGTCGCCTTGGTAGGCCTTTACCCC 288 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 |||||||||||||| || | || ||||| |||| |||| | |||||| | Sbjct 289 ACCAACTAGCTAATCTGATTTAGGCTCATCTAATAGCAAGAG----CTTGCGCCCCCT-T 343 Query 241 TTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA 300 | | | | || |||||||||||| |||||| | |||||||| | | | Sbjct 344 TCACCCGTAGGTCG-TATGCGGTATTAATTCGAGTTTCCCCGAGCTATCCCCCACTACTA 402 Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTT 360 ||||| |||| | | |||||||||||||||||||| ||| | |||||||| | Sbjct 403 GGCAGATTCCTAAATGTTACTCACCCGTCCGCCACTAATCA--TATCTAGCAAGCTAGAT 460 Query 361 CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 461 --AATCATCGTTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCAATCTGAG 512 >seq4141 Length=628696 Score = 181 bits (200), Expect = 3e-43 Identities = 146/175 (83%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 22 TTCTTCATA-CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 || ||||| |||||||||| ||| | |||||||| ||||||||| | || ||||||||| Sbjct 193217 TTTTTCATTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCAC 193276 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||||||||||||||||||| |||||||||||| ||| ||||| || ||||||||| Sbjct 193277 TGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGTTGATCATCCTCTT 193336 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||||||||| ||| | |||| ||| || ||| || | |||||||||||||| Sbjct 193337 GGACCAGCTACTAATCATTGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 193391 >seq7528 Length=2495505 Score = 156 bits (172), Expect = 1e-35 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 || || ||||||||| | | |||| ||||| ||| | ||||| || ||||||||||| || Sbjct 1571307 ACTCGTAGGCCTTCTACCTTCACGTGGCATTGCTACGTCAGGATTTCGCCCATTGTGGAA 1571366 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||| ||||||||||||||||| |||| ||| ||||||| | ||||||||| || Sbjct 1571367 AATTCATCACTGCTGCCTCCCGTAAGAGTTTGGGTTATGTCTCAATCCCAGTGTGGTTGA 1571426 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 ||||||||| |||||| ||| ||| |||||| ||| | ||| || | ||||||||| Sbjct 1571427 TCATCCTCTTAGACCAACTACTAATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGC 1571486 Query 191 TAAT 194 |||| Sbjct 1571487 TAAT 1571490 >seq32717 Length=16798 Score = 149 bits (164), Expect = 2e-33 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | ||| | ||| | | |||||||||| ||||||||||| || Sbjct 13266 ACCCGTAGGCCTTCTACCTTCACACAACATTGTTCCATCAGGCTTTCGCCCATTGTGAAA 13325 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||| | |||||| | ||||||||||| | |||||||| | ||||||| | Sbjct 13326 AATTCCCCATTACTGCCTTCTTTAGGAGTCTGGGTCAGGTCTCAGTCCTAGTGTGGTTAA 13385 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||||||||| ||| || | ||||| ||| | ||| || | ||||||||| Sbjct 13386 TCATCCTCTCAGACCAACTATTGACCATCGCCATGGTATGTTATTGCCTCACCAACTAGC 13445 Query 191 TAATC 195 ||||| Sbjct 13446 TAATC 13450 >seq7238 Length=61032 Score = 129 bits (142), Expect = 1e-27 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||||| | || | ||||| | | | |||| || || ||||||| || ||| | Sbjct 56492 AGGCCTTCTACCCTCATGTGGCATTGGTTCGTCAGAATTTTGCTCATTGTGGAAAATTAC 56551 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 | | | |||||||| ||||||||| | |||||||||||| | |||||| || |||||| Sbjct 56552 CTAATATTGCCTCCCATAGGAGTCTAGGCCGTGTCTCAGTCCTAGTGTGATTGATCATCC 56611 Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||||| | ||| |||| || ||| ||| || |||||| |||||||||||||| Sbjct 56612 TCTCAGACTAACTATTGATCATCACCTTGGTAAGCTATTACCTTACCAACTAGCTAATC 56670 >seq21399 Length=699063 Score = 114 bits (126), Expect = 3e-23 Identities = 100/123 (81%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||||| | | |||| ||||| ||| |||||||| || ||||||| || ||||| Sbjct 383100 AGGCCTTCTACCTTCACGTGGCATTGCTCTGTCAGGCTTTCGTCCATTGTAGAAAATTCC 383159 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 | ||| |||||||| |||||||| | | | |||||| |||||||||||||||| ||||| Sbjct 383160 C-ACTACTGCCTCCTGTAGGAGTGTAGGCTGTGTCTTAGTTCCAGTGTGGCTGATCATCG 383218 Query 137 TCT 139 ||| Sbjct 383219 TCT 383221 >seq31919 Length=2315549 Score = 102 bits (112), Expect = 2e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| || ||||||| || Sbjct 287439 ACCCGTAGGCCTTCTACCTTCACGCGGCATTGCTCCGTCAGGCTTTCGTCCATTGTAGAA 287380 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGT 99 |||||||||||||||||||||||| ||| Sbjct 287379 AATTCCCCACTGCTGCCTCCCGTAGAAGT 287351 >seq14257 Length=243754 Score = 80.6 bits (88), Expect = 7e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 || ||||| ||| ||||||| || ||| ||||| |||||||||| ||||||||||| || Sbjct 27899 TCTGGCTTTCGCTCATTGTGGAAAATTTCCCACCGCTGCCTCCCATAGGAGTCTGGGCCT 27958 Query 108 TGTCTCAGT 116 ||||||||| Sbjct 27959 TGTCTCAGT 27967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221994529920