Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4996 228 2e-57 seq4141 199 1e-48 seq32717 192 2e-46 seq7528 183 9e-44 seq31919 172 2e-40 seq7238 150 5e-34 seq30937 104 7e-20 seq10806 87.8 5e-15 >seq4996 Length=541 Score = 228 bits (252), Expect = 2e-57 Identities = 230/304 (76%), Gaps = 25/304 (8%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 || ||||||||||||||| ||||| ||| |||||||||||||||| ||| | | |||| Sbjct 306 TCAGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCTGTAACTGGTCTGA 247 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| | |||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 246 GAGGATGATCAGTCACACCGGAACTGAGACACGGTCCGGACTCCTACGGGAGGCAGCAGT 187 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||||||| |||||||| || |||||| |||| | |||||||| | || |||||| Sbjct 186 GGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGC 127 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-----TAAT------------------ 380 ||| ||| ||||||| || | || ||| || |||| Sbjct 126 CTTTTGGTTGTAAAGCACTTTAAGCAGGGAGGAGAGGCTAATGGTTAATACCCATTAGAT 67 Query 381 --GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||| ||| || || |||| |||||||||| |||||||||||||||||||||| Sbjct 66 TAGACGTTACCTGCAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAG 7 Query 439 AGGG 442 |||| Sbjct 6 AGGG 3 >seq4141 Length=628696 Score = 199 bits (220), Expect = 1e-48 Identities = 148/173 (86%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||| | ||| |||||| | Sbjct 193398 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCAATGATTAGTAGCTGGT 193339 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| ||||| ||||||||| |||||||||||| ||| ||||||||||||||||| Sbjct 193338 CCAAGAGGATGATCAACCACATTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 193279 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGA 332 ||||||||||| || | |||||||| ||||||||| | ||||| ||||||||| Sbjct 193278 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGA 193226 >seq32717 Length=16798 Score = 192 bits (212), Expect = 2e-46 Identities = 254/350 (73%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| ||| || ||||||||||||||||||| ||| || | ||||| ||||| | || Sbjct 13467 AGGAGGGACTCGTGTCTGATTAGCTAGTTGGTGAGGCAATAACATACCATGGCGATGGTC 13408 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 | ||| | |||||||| |||| ||||| | | |||||||| | ||| ||||||| Sbjct 13407 AATAGTTGGTCTGAGAGGATGATTAACCACACTAGGACTGAGACCTGACCCAGACTCCTA 13348 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 | |||||| | |||||||| || |||||||||| ||||||||||| | ||| | | | Sbjct 13347 AAGAAGGCAGTAATGGGGAATTTTTCACAATGGGCGAAAGCCTGATGGAACAATGTTGTG 13288 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTA 387 ||| | |||||||| |||||| | || || | | | ||||| ||||| |||| Sbjct 13287 TGAAGGTAGAAGGCCTACGGGTCATGAACTGCTTTTCCCGGAGAAGAACCAATGATGGTA 13228 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447 |||| |||| | ||||||| |||||||||| || ||||| || ||| || | Sbjct 13227 TCCAAGGAATAAGCATCAGCTAACTTTGTGCCAGCAGTCGTGGTAAGACAGAGGATGCAA 13168 Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 || |||| |||| || | ||| |||||| | |||||||| || |||| Sbjct 13167 GCATTATTTGGAA-TAATTGGGTGTAAAGCATTTGTAGGTGGCTTTTTAA 13119 >seq7528 Length=2495505 Score = 183 bits (202), Expect = 9e-44 Identities = 255/354 (72%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| |||| | || | |||||||||||||| ||| || ||||||||||||| ||| Sbjct 1571508 AGGAGAGACTCATGTTTCATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATT 1571449 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 ||||| | || ||||| ||||| ||||| ||| | ||||||| |||||||| || Sbjct 1571448 AGTAGTTGGTCTAAGAGGATGATCAACCACACTGGGATTGAGACATAACCCAAACTCTTA 1571389 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||| |||| || |||||||||| ||| ||||| | ||||| ||| || Sbjct 1571388 CGGGAGGCAGCAGTGATGAATTTTCCACAATGGGCGAAATCCTGACGTAGCAATGCCACG 1571329 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAA--GCTCTGTCCTCAAGGAAGA--TAATGACGG 385 ||| | |||||||| || ||| | || | | | ||| ||||| ||| || Sbjct 1571328 TGAAGGTAGAAGGCCTACGAGTCATGAACTTTTTTTTTCTCGGAGAAGAAGCAATAACAA 1571269 Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 || ||||| |||| | |||||| |||| || || ||| |||| | || || Sbjct 1571268 TATCCGAGGAATAAGCATCAACTAACTTTGTGCTAGTAGTCGCAGTAAGTCAGAGAATGC 1571209 Query 446 TAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| |||| | ||| | | | |||||||| || |||||||| || |||||| Sbjct 1571208 AAGCATTATTTGAAATGA-TTGTGCGTAAAGTGTATGTAGGTGGCTTTTTAAGT 1571156 >seq31919 Length=2315549 Score = 172 bits (190), Expect = 2e-40 Identities = 184/241 (76%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 ||||| |||||||||||||||||||||||| || ||||||| | ||||||||| | ||| Sbjct 287349 AAACTTCTACGGGAGGCAGCAGTGGGGAATTTTCTACAATGGACGAAAGCCTGACGGAGC 287408 Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TA 378 || ||||||||| | |||||||| |||||| | || ||| | | | ||||| | Sbjct 287409 AATGCCGCGTGAAGGTAGAAGGCCTACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCA 287468 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 ||||||||| | ||| |||| ||||||||| ||||||||||||||||||| || Sbjct 287469 ATGACGGTATAAGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAG 287528 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 ||| || || |||||| |||| | | |||||||||| || || |||| | ||||| Sbjct 287529 AGGATGCAAGTGTTATCTAGAATGA-TTGGGCGTAAAGCGTCTGTGTGTGGCATTTTAAG 287587 Query 499 T 499 | Sbjct 287588 T 287588 >seq7238 Length=61032 Score = 150 bits (166), Expect = 5e-34 Identities = 188/257 (73%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 166 TGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||||||||||||||||||||| ||||||||||| || ||||| ||| |||||| Sbjct 56671 TGATTAGCTAGTTGGTAAGGTAATAGCTTACCAAGGTGATGATCAATAGTTAGTCTGAGA 56612 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||| | | |||||||||||| | | ||||||| |||||||| | | | Sbjct 56611 GGATGATCAATCACACTAGGACTGAGACACGGCCTAGACTCCTATGGGAGGCAATATTAG 56552 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT 345 | ||| || ||||||| |||||| |||| | | ||| ||| | |||| | |||||||| Sbjct 56551 GTAATTTTCCACAATGAGCAAAATTCTGACGAACCAATGCCACATGAGGGTAGAAGGCCT 56492 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCCC 403 || | || ||| | | || ||||| |||||| ||| | | ||| || | Sbjct 56491 ATGGCAGATGAACTTCTTTTCCCAGAGAAGAGGCAATGACAGTATTCGGGGAATAAACAT 56432 Query 404 CGGCTAACTACGTGCCA 420 ||||||||| ||||| Sbjct 56431 CGGCTAACTCTATGCCA 56415 >seq30937 Length=4778 Score = 104 bits (114), Expect = 7e-20 Identities = 82/97 (85%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||||| |||| || ||||||| |||||||| Sbjct 4778 CGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCGGAATTA 4719 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || |||||||||| | | |||||||| | ||||||| Sbjct 4718 CT-GGGCGTAAAGCGAGTGTAGGTGGCTCATTAAGTC 4683 >seq10806 Length=1062488 Score = 87.8 bits (96), Expect = 5e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| ||| ||||| ||||||||| |||||||| || Sbjct 1038031 AATGACGGTATCTGGGGAATAAGCATCGGTTAACTCTGTGCCAGCAAGCGCGGTAAGACA 1037972 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||| ||||||||||| | | ||||||||| ||| ||| |||| || |||| Sbjct 1037971 AAGGATGCAAGCATTATCCGGAATGA-TTGGGCGTAAA-GGTCTGTAAGTGGCTTTTTAA 1037914 Query 498 GT 499 || Sbjct 1037913 GT 1037912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497103246080