Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq30937 385 2e-104 seq13785 152 2e-34 seq18627 129 2e-27 seq30545 127 7e-27 seq32393 113 2e-22 seq14405 93.3 1e-16 seq2738 89.7 2e-15 seq32717 80.6 9e-13 >seq30937 Length=4778 Score = 385 bits (426), Expect = 2e-104 Identities = 379/482 (79%), Gaps = 8/482 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | ||| || |||| ||||||||||||| ||||||||| |||| Sbjct 2280 CGAGTCTTAATAGGGCGTCTAGTTGCAGGGTATAGACCCGAAACCGAGTGATCTATCCAT 2221 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | |||| |||| ||| |||||| | ||||| ||||||||||| |||||||| Sbjct 2220 GAGCAGGTTGAAAGTGACGTAACAGTTACCGGAGGACCGAACCCACTGTCGTTGAAAAGC 2161 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||| ||||| ||||||||||||||||| |||||| || ||||||||||||| Sbjct 2160 CAGGGGATGACTTGTGGATAGGGGTGAAAGGCTAATCAAACTCGGTGATAGCTGGTTCTC 2101 Query 181 TCCGAAAACTATTTAGGTAGTGCCTC-AAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 |||||| |||||||||||| ||||| | | |||||| ||||||||||||||||| | Sbjct 2100 CCCGAAAGCTATTTAGGTAGCGCCTCGGACGAACACCATTGGGGGTAGAGCACTGTTTCG 2041 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA- 298 ||||||||||||| |||||||||||||| |||||||||||||| | || ||| || Sbjct 2040 GCTAGGGGGTCATCTCGACTTACCAAACCGATGCAAACTCCGAATACCGATGAGTGATAT 1981 Query 299 CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 ||| | || || ||| ||||||||| |||||| | ||||| || || || ||| Sbjct 1980 CCGGGAGACAGACGGC--GGGTGCTAACGTCCGTCGTCAAGAGGGAAACAACCCAGACCG 1923 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||||||| || | || ||||| | ||||| || || || |||||| Sbjct 1922 CCAGCTAAGGCCCCAAATTCCTAGTTAAGTGGGA--AACGATGTGGGAAGGCACAGACAG 1865 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCG 478 |||||| |||||||| |||||||||| | |||||||| |||||| ||||||||||||| Sbjct 1864 CTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTCG 1806 Query 479 AG 480 || Sbjct 1805 AG 1804 >seq13785 Length=113992 Score = 152 bits (168), Expect = 2e-34 Identities = 317/461 (69%), Gaps = 26/461 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| || |||| Sbjct 106338 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGACCTTGGA 106397 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 106398 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 106457 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| ||| ||||| |||||| |||| | || | || Sbjct 106458 AACCAAGATCGGATATAGCTGGTTTTCTGCGAAATCTATTTCAGTAG-AACGCATG-ATG 106515 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | |||| |||||| |||||||| | |||| || |||||||| | Sbjct 106516 TCAATGGCCCGAGGTAAAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 106575 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||| ||| | || ||| || ||| || | ||||| Sbjct 106576 CCAGGGAAACTCCAAATACAGGCCTAGATCGTTTGTAC----AGACAAACTTTTAGGGTG 106631 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| | ||||| || | || || | ||||||| ||| || | Sbjct 106632 CTAAGATCCAAAGTCAAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 106691 Query 382 GCTAAGTTAAACTAACGAAGTCTGATTG--CTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || | | || || |||| |||| | | | |||| | |||| || ||||||||||| Sbjct 106692 ACTTACTGGAA--AAGGAAG--TGATCGAACGATGACAACCAGGAGGTGGGCTTGGAAGC 106747 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 106748 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 106787 >seq18627 Length=31601 Score = 129 bits (142), Expect = 2e-27 Identities = 387/586 (66%), Gaps = 40/586 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| ||| ||| | ||| || | | |||| ||| | |||||||| ||||| Sbjct 26884 CGAGTCTTCACAAGGCAATTGTCACTACTTATGGACCTGAACCTGGGTGATCTATCCATG 26825 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||| |||| ||| |||||||| ||| Sbjct 26824 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCTGAACTGACTGATGTTGAAGAATC 26765 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | ||||| || ||| |||||||| Sbjct 26764 AGTGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCAAACCCAGAGCTAGTTGGTTCTCC 26705 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| ||| |||| || ||| | || |||| | |||| |||||| || Sbjct 26704 CCGAAATGCATTGAGGTGCAGC----AGT-TGACTAGACATCTAGAGGTAAAGCACTATT 26650 Query 237 ATGGCTAGGGGGTCATTGCGACT--TACCAAACCATTGCAAACTCCGAATGC-------- 286 | | | | | | || | || | ||| ||| | |||||||| |||| | Sbjct 26649 -TCGAT-GCGAGCCA-CGAGAGTGGTACTAAATCGAGGCAAACTCTGAATACTAGATATG 26593 Query 287 GCATCAGTTTTAC-----------CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCC 335 | ||| | || | | |||||| ||||| | |||| | | | Sbjct 26592 ACCTCAAAATAACAAGGGTCAAGTCCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGT 26533 Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | |||| | ||||||||||||| ||||||| ||| | | | | | Sbjct 26532 CGAGAGGGAAACGACTCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAATGATA--A 26475 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| ||||| | ||| || || | |||||||||| | || |||| Sbjct 26474 AAGAGGTAGGGGTGCAGAGACAACCAGGCGATTTGCCTAGAAGCAGCCA-CCCTTGAAAG 26416 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| || | || || | |||| |||| Sbjct 26415 AGTGCGTAATAGCTCACTGATCGAGCGCTCTTACACCGAAGATGAACGGG-GCTAAGCGA 26357 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGCAT 560 ||| |||||| ||||||| | | ||| |||||||||||||||| Sbjct 26356 TCTGCCGAAGTTGTGGGAT-GTAAAAATGAATCGGTAGGGGAGCAT 26312 >seq30545 Length=481101 Score = 127 bits (140), Expect = 7e-27 Identities = 384/584 (66%), Gaps = 42/584 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | ||||| || | ||||||| ||||| Sbjct 73278 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCAAACCTGGGTGATCTGTCCATG 73219 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||| ||||||| | ||| | || |||||||||||| |||||||||||| ||| Sbjct 73218 ACCAAGATGAAGCTTGGGTGAAACTAAGAGGAGGTCCGAACTGACTAATGTTGAAGAATC 73159 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || |||| || ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 73158 AGTGGATAAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 73099 Query 182 CCGAAAACTATTTAGGT--AGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTG 234 | ||| | || |||| ||| ||| | || |||| |||||| | ||||| Sbjct 73098 CTAAAATCCGTTGAGGTGCAGT------AGT-TTACTAGACATCTAGGGGTAAAACACTG 73046 Query 235 TTATGGCTAGGGGGTCAT-TGCGACTTACCAAACCATTGCAAACTCCGAATGC------- 286 || || | ||| ||| | | ||||||| | |||||||| |||| | Sbjct 73045 TTTCGG--TGCGGGCCATGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATAT 72988 Query 287 -GCATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGC 334 | ||| | || || |||||| ||||| | |||| | | | Sbjct 72987 GACCTCAAAATAACAAGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCG 72928 Query 335 CCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACT 394 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | Sbjct 72927 TCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA-- 72870 Query 395 AACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAA 454 || || || | ||| ||||| | |||| ||| | | |||||||||| | || ||| Sbjct 72869 AAGGAGGTAGGGGTGCAGAGACAACCAGGAGGTTTTCCTAGAAGCAGCCA-CCCTTGAAA 72811 Query 455 GAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTT 514 || ||| ||| |||||||| ||||| || | | || || | |||| |||| Sbjct 72810 GAATGCATAATAGCTCACTGATCGAGCGCTCTTGTGCCGAAGATGAACGGG-GCTAAGCG 72752 Query 515 GTCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAG 557 ||| || |||| ||||| | | | ||| ||||||||||||| Sbjct 72751 ATCTGCCAAAGCTGTGGGGT-GTAAAAATGAATCGGTAGGGGAG 72709 >seq32393 Length=1001144 Score = 113 bits (124), Expect = 2e-22 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 56197 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 56256 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||||| | |||| Sbjct 56257 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAACCAGGAG 56314 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| || Sbjct 56315 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 56373 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATGA 545 ||| || || | |||| |||| ||| ||||||| ||||||| | | | Sbjct 56374 TTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAAAGAA 56432 Query 546 TCGGTAGGGGAGC 558 ||||||||||||| Sbjct 56433 TCGGTAGGGGAGC 56445 >seq14405 Length=96599 Score = 93.3 bits (102), Expect = 1e-16 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 11 ACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATG 70 ||||||| | ||| || | |||||||||| | |||||||| ||||| |||||||| Sbjct 36529 ACAGGGCAATTGTCATTGCTTATAGACCCGAACCTGGGTGATCTATCCATGACCAGGATG 36588 Query 71 AAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGA 130 ||| | ||| | || |||||||||||||| ||| |||||||| ||| || |||||| Sbjct 36589 AAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGA 36648 Query 131 G 131 | Sbjct 36649 G 36649 >seq2738 Length=157879 Score = 89.7 bits (98), Expect = 2e-15 Identities = 174/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 315 ATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGA 374 ||||| | |||| | | | ||||||| || | ||||| | ||||||||||||| | Sbjct 89447 ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTA 89506 Query 375 AATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTG 434 |||||| ||| ||| | | || || || | ||| ||||| | |||| ||| || | Sbjct 89507 AATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAACCAGGAGGTTTGCCTA 89564 Query 435 GAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGA 494 |||||| ||| | || ||||||||| ||| |||||||| ||||| || ||| || Sbjct 89565 GAAGCATCCA-CCCTTGAAAGAGTGCATAATAGCTCACTGATCGAGCGCTCTTGCGCCGA 89623 Query 495 TAATAATCGGGTATTA---AGTTGTC---TACCGAAGCAGTGGGATCATTTATATG-ATC 547 || | |||| | | | || | | ||||||| ||||||| | | ||| ||| Sbjct 89624 AGATGAACGGGGCTAAGCGATCTGCCGAATGCCGAAGCTGTGGGAT-GTAAAAATGAATC 89682 Query 548 GGTAGGGGAGC 558 ||||||||||| Sbjct 89683 GGTAGGGGAGC 89693 >seq32717 Length=16798 Score = 80.6 bits (88), Expect = 9e-13 Identities = 124/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | || || | |||||| Sbjct 8847 AGTGAGACAATGGGGGATAAGCTTCATTGTCGAGAGGGAAACAGCCCAGATCACCAGCTA 8788 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| | | | | || || || | ||| ||||| | | || Sbjct 8787 AGGCCCCTAAATGACCGCTCAATGATA--AAGGAGGTAGGGGTGCATAGACAACCAAGAG 8730 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || | |||||| ||| | || ||||||||||||| |||||||| ||||| Sbjct 8729 GTTTGCCTAGAAGCAACCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAG 8676 Score = 75.2 bits (82), Expect = 4e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||||||| |||||| ||| |||||||| ||| | || ||||| | ||| | |||||||| Sbjct 9314 TGGAGGTTCGAACCGACTGATGTTGAAGAATCAAGG-ATGAGTTATGGTCATGGGTGAAA 9256 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 || | | ||| | || |||||||||||| |||||| Sbjct 9255 TGCCACTCGAACCTAGAGCTAGCTGGTTCTCCCCGAAA 9218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689039559680