Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq30937 138 2e-30 seq30002 107 4e-21 seq23526 104 4e-20 seq33041 84.2 4e-14 seq30545 78.8 2e-12 seq32717 75.2 2e-11 >seq30937 Length=4778 Score = 138 bits (152), Expect = 2e-30 Identities = 184/252 (73%), Gaps = 9/252 (4%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||||||||||||||||||||| | | |||||||||| ||||| ||| ||||| | Sbjct 2876 AGTGCACATGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGACAGCCTGCGAAA 2817 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| ||||||| | | || | || ||||||| ||| || ||||||||||||| | Sbjct 2816 AGCGTCGGGGAG-GCGGCAATATCCTGTGATCCGGCGATATCTGAATGGGGAAACC---C 2761 Query 121 CCTTTGGGTCAT--TGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAA 178 ||| ||||| || | || || | | | | || ||| || ||| |||| Sbjct 2760 ACTT---GTCATAAGACAGGTATCGTAAATTTATTTACGAGGCAAACCGGGAGAAGTGAA 2704 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||||| |||| | ||||||||| ||||| ||||||||| ||||| |||||||||| Sbjct 2703 ACATCTCAGTAACCCGAGGAAAAGACATCAATAGAGATTCCCCTAGTAGCGGCGAGCGAA 2644 Query 239 ATGGGATGAGCC 250 |||| ||||| Sbjct 2643 CGGGGAGGAGCC 2632 >seq30002 Length=1098084 Score = 107 bits (118), Expect = 4e-21 Identities = 94/116 (81%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| || || | |||| || ||| ||| |||||||||||||| ||||||| | Sbjct 520428 TGCTGAATCCACGGGCAGGCAAGAGACAACCCGGTGAACTGAAACATCTTAGTAGCTAGA 520487 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||||| ||||| |||||||||||||||| ||||| Sbjct 520488 GGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 520543 Score = 89.7 bits (98), Expect = 9e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 || |||||||||||||| |||||| ||||||||||| ||| | |||||| ||||| Sbjct 520738 GGTGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCAATTCCCGTAGTAG 520797 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||||||||| ||||| Sbjct 520798 TGGCGAGCGAAATGGGAGTAGCCT 520821 >seq23526 Length=1441385 Score = 104 bits (114), Expect = 4e-20 Identities = 174/246 (71%), Gaps = 12/246 (5%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| || | || | | ||||| ||||||| ||| | ||| || Sbjct 1198151 ATGGTGGATACCTAGGTACCCAGAGACCAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 1198092 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGA-ATGGGGAAACCCGGCCCTTTG 126 |||||| | ||| | | | |||||| |||| |||| || || |||| ||| Sbjct 1198091 GGGAGTT-GAAAATAAGCGTAGATCCGGGGATTCCCGATATAGGTCAACC------TTTC 1198039 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTA 185 | | ||| |||||||| || || | |||| || ||| || |||||||||||||| Sbjct 1198038 GAAC--TGC-TGCTGAATCCACGGGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTT 1197982 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||||| ||||||||||| ||| | |||||| | ||||| || ||||||||||||| Sbjct 1197981 AGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCTATAGTAGCGGTGAGCGAAATGGGAA 1197922 Query 246 GAGCCT 251 ||||| Sbjct 1197921 CAGCCT 1197916 >seq33041 Length=152846 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 || |||||||||||||| ||||||| ||||||| ||| ||| | |||| || ||||| Sbjct 17984 GGTGAACTGAAACATCTTAGTAGCTAGAGGAAAATAAAACAAAAGCGATTTCCTTAGTAG 17925 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 ||| ||||||||||||| ||||| Sbjct 17924 TGGTGAGCGAAATGGGAGCAGCCT 17901 >seq30545 Length=481101 Score = 78.8 bits (86), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 139 CTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||| || || | |||| || ||| || ||||| |||||||| |||||| ||| Sbjct 73786 CTGAATCTATGGGCAGGCAAGAGACAACATGGTGAACTAAAACATCTTGGTAGCTAGAGG 73727 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||| ||| | |||||||| ||||| |||||| |||||||| Sbjct 73726 AAAAGAAAGCAAAAGCGATTCCCATAGTAG-CGCGAGCAAAATGGGA 73681 >seq32717 Length=16798 Score = 75.2 bits (82), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| || || | |||| || ||| || ||| |||||||||| | |||| | Sbjct 9611 TGCTGAATCCACGGGCAGGCAAGAGACAACTTGGTGAATTGAAACATCTTAATAGCCAGA 9552 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||| ||||| ||||||||||||||| ||||| Sbjct 9551 GGAAAAGAAAGCAAAAGCAATTCCTGTAGTAGCAGCGAGCGAAATGGGAGCAGCCT 9496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918095366720