Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq30937 316 7e-84 seq13785 159 1e-36 seq30545 114 4e-23 seq21169 107 7e-21 seq4760 98.7 3e-18 seq365 96.9 1e-17 seq32717 89.7 2e-15 seq22052 86.0 2e-14 seq7409 77.0 1e-11 >seq30937 Length=4778 Score = 316 bits (350), Expect = 7e-84 Identities = 412/567 (73%), Gaps = 21/567 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||| |||| | ||| ||| ||| |||| | |||| || Sbjct 552 TCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTTCGAACGATTTCC 611 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| ||||| | ||||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 612 GACCGTTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 670 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||||||||||| || ||||| || | | | | | || |||||| ||| Sbjct 671 TCAAACTACCCACCATACATTGTCCTCAGCTCTGTTAA---GCTTGAGTTAGAACCCCAA 727 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | ||| |||||||||||| | | ||||||| |||| ||||| | || ||| || Sbjct 728 CATTACCAGGGTGGTATTTCAAGGATGGCTCCACAGACACTGGCGTGCCTGCTTCAAAGC 787 Query 241 CTCCCACCTATCCTACACA---AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 ||||||||||||||||||| || || || |||| ||||| |||| ||||| Sbjct 788 CTCCCACCTATCCTACACAGGTAAGGTCA---AAGTTCAATGTAAAGCTGTAGTAAAGGT 844 Query 298 CC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||||| |||| |||||| | | |||||||| ||| | | | |||||| Sbjct 845 TCACGGGGTCTTTCCGTCTAGCCGCGGGTACACAGCATCTTCACTGCGATTTCGATTTCA 904 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 | | | || || | |||||||| | || ||| |||||||||||||||||||||||| Sbjct 905 CTGAGTCTCTGCTGGAGACAGCGCCGCCATCATTATGCCATTCGTGCAGGTCGGAACTTA 964 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 965 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 1024 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 ||| || | || || | || ||| || | |||||||||||||| Sbjct 1025 TTCGATCAAGAGCTTCGCTTAC----------GCTAACCCCATCAATTAACCTTCCAGCA 1074 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||| ||| || ||||| || Sbjct 1075 CCGGGCAGGCATCACACCCTATACGTC 1101 >seq13785 Length=113992 Score = 159 bits (176), Expect = 1e-36 Identities = 285/413 (69%), Gaps = 21/413 (5%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| || | |||||||||| ||| ||||| || | ||||||| ||||||||||||| Sbjct 108088 ACCTTCGGACACCTCCGTTACTCTTTAGGAGG-CATCTGCCCCAGATAAACTACCCACCT 108030 Query 136 GGCACTGTCCCCAACCCAGA---TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGAG 191 || ||||||| ||| | | ||| || |||||| |||| | |||| Sbjct 108029 CACAGTGTCCCCCCCCCCCAAATTTTTGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAG 107970 Query 192 TGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTAT 251 |||| ||||| | | ||| | | |||| ||||||||||| Sbjct 107969 TGGTCTTTCAGGATTGGT--------------CGTT-CTGTGTCATCACCTCCCACCTAT 107925 Query 252 CCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTT 310 |||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 107924 CCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTAC 107865 Query 311 CGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTT 370 |||| |||| | | ||||||| || | | |||||||| |||| | || Sbjct 107864 CGTCTAGCCGTTGGTACTCTGCATCTTCACGGAGAATTCAATTTCATCGGGTCCATGTCG 107805 Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| ||| ||||||||| ||||||||| ||||| ||||| |||||||||||| Sbjct 107804 GAGACAGTGGGGCAGTCGTTACACCATTCGTGTAGGTCACTACTTATGCGACAAGGAATT 107745 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||||| |||| |||||| |||| |||||| ||||||| ||| Sbjct 107744 TCGCTACCTTAGGACAGTTAGAGTTACTGCCGCTGTTTACCAGGGCTTCCATT 107692 >seq30545 Length=481101 Score = 114 bits (126), Expect = 4e-23 Identities = 327/489 (67%), Gaps = 18/489 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || |||| ||| |||||||||||| ||| || ||||| | || | | | Sbjct 71543 TCGACGGGTGGGTCTTGCAATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAAACT-C 71601 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | |||||| |||||||| |||||||||||| ||| |||||| || |||||| Sbjct 71602 CGTCTGGCCTGAGGAAACCTTTGCACGCCTCCGTTACCTTTAGGGAGGCTTAC-GCCCCA 71660 Query 120 GTTAAACTACCCACCAGGCACTGTCCC-CAACCC--AGATCATGGGCCAAGGTTAGATAT 176 |||||| | ||| | ||| |||| | | | || || ||| |||||||||| | Sbjct 71661 TAGAAACTATCTACCTGAGACTATCCCTCGGCTCGTAGGTCCTGGAACAAGGTTAGAATT 71720 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCA 233 | | | |||||||||| ||| | | ||| | | ||| || | |||| Sbjct 71721 CTAGCTCTTCTAGAGTGGTATCTCACTGATGGCTCTGGCCCCCCCAGAAG-GAGGCCT-- 71777 Query 234 TCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGT 291 || | | | ||||||| || | || || || | || |||||| ||| | | ||| Sbjct 71778 TCTTTGCCCTCCACCTAAGCTGCGCAGGAAAAGCCC--AAAGCCAATCCCAGGAAACAGT 71835 Query 292 GAAGGTCCCGG-GGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCA 350 |||| | | ||||||| |||| || | | ||||||| || | | Sbjct 71836 GAAGCTTCATATGGTCTTTCTGTCCAAGTGCAGGTAGTCCGCATCTTCACAAACATGTCT 71895 Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGG 410 ||||||||| | || | ||| ||| | || ||| ||| ||| ||| ||| || Sbjct 71896 ATTTCACCGAGTCTCTCTCCGAGGCAGTGCCCAAATCATTATGCCTTTCATGCGGGTTGG 71955 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||| ||||||||||| |||||||||| || ||||||||||| ||||||| || Sbjct 71956 AACTTACCTGACAAGGAATTGCGCTACCTTAAGA-CGTTATAGTTACGGTCGCCGTTCAC 72014 Query 471 TGGGGCTTC 479 | |||||| Sbjct 72015 CGAGGCTTC 72023 >seq21169 Length=217455 Score = 107 bits (118), Expect = 7e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| ||| |||| |||| |||||||||||||||| ||||| ||||| |||||| Sbjct 89509 GAGACAGCGGGGCAGTCATTACACCATTCGTGCAGGTCGCTACTTATGCGACACGGAATT 89568 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 || ||||||||||| ||| |||||| | | ||||||| |||||| Sbjct 89569 TCACTACCTTAGGACATTTAAAGTTACTGCTGTCGTTTACCGGGGCT 89615 >seq4760 Length=2462692 Score = 98.7 bits (108), Expect = 3e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || |||| || ||||||| ||||||||||||||| ||||||||||| |||||||| ||| Sbjct 2260353 TCATTACACCTTTCGTGCTGGTCGGAACTTACCCAACAAGGAATTTTGCTACCTTGGGAC 2260294 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| || ||| ||||||||||| Sbjct 2260293 CGTTATAGTTATAGTCGTTGTTCACTGGGGCTTC 2260260 >seq365 Length=174009 Score = 96.9 bits (106), Expect = 1e-17 Identities = 112/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||| |||||||||||||| |||||||||| ||||||||||| |||||||| | Sbjct 146619 AACTTACCTGACAAGGAATTTCGTTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAT 146560 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| || || ||| || || | | |||| | ||| ||||| Sbjct 146559 CGGGGCTTCGGTT-GTCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 146506 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| |||||||||||||||| |||| Sbjct 146505 CCGGCACTGGGCAGGCGTCAGTCCCCATAC 146476 >seq32717 Length=16798 Score = 89.7 bits (98), Expect = 2e-15 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||| || ||| ||| ||| | ||||||||||| ||||||||| ||||||||||||| Sbjct 2299 TCGTTACACCTTTCATGCGGGTTGAAACTTACCCGATAAGGAATTTTGCTACCTTAGGAT 2358 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||| |||| | | ||| ||| |||| || Sbjct 2359 CGTTATAATTACGATTTCTGTTCACTAGGGCCTC 2392 >seq22052 Length=270253 Score = 86.0 bits (94), Expect = 2e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||| |||||||||| || ||||||||| |||||||||||||||||||||||| Sbjct 52091 GTTACGCCTTTCGTGCAGGGCGAAACTTACCCAACAAGGAATTTCGCTACCTTAGGA 52035 >seq7409 Length=2268560 Score = 77.0 bits (84), Expect = 1e-11 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 393 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATA 452 ||| ||||||| | || || ||||||||||| ||||||| ||| ||| ||| |||||| Sbjct 1640190 GCCTTTCGTGCGGATCAAAATTTACCCGACAATGAATTTCACTATCTTTGGACCGTTATA 1640249 Query 453 GTTACCACCGCCGTTTACTGGGGCTTCAAT 482 |||| |||||||| || ||| |||| || Sbjct 1640250 GTTATGGCCGCCGTTCACCGGGACTTCGAT 1640279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701835313920