Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4996 138 2e-30 seq4141 107 4e-21 seq7528 89.7 1e-15 seq31919 84.2 5e-14 >seq4996 Length=541 Score = 138 bits (152), Expect = 2e-30 Identities = 205/289 (71%), Gaps = 15/289 (5%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTA-CATACAAGCTCCCACACG 59 |||||||||||| |||||||||| ||||||||| ||||| | | || || | | Sbjct 19 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCTGCAGGTAACGTCTAATCTA----ATG 74 Query 60 TGGA---------AGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCA 110 | | || | | ||||| | |||| ||||||| | || ||||| Sbjct 75 GGTATTAACCATTAGCCTCTCCTCCCTGCTTAAAGTGCTTTACAACCAAAAGG-CCTTCT 133 Query 111 TCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTG 170 || ||||| | ||||||| |||| | | |||||| |||||||||| |||||||| Sbjct 134 TCACACACGCGGCATGGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTG 193 Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 |||||||||||||| |||||||||||||||||| |||| || | |||||||||| | Sbjct 194 CCTCCCGTAGGAGTCCGGACCGTGTCTCAGTTCCGGTGTGACTGATCATCCTCTCAGACC 253 Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || ||||| | || ||| |||| ||||||| || |||| ||||| Sbjct 254 AGTTACAGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAAT 302 >seq4141 Length=628696 Score = 107 bits (118), Expect = 4e-21 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||||| ||||||| | | ||| |||| || ||| |||||| || ||||| |||| Sbjct 193220 TTCAT--TTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACT 193277 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 |||||||||||||||||| ||| |||||||||||| ||||||||| || | |||||| Sbjct 193278 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGTTGATCATCCTCTTG 193337 Query 227 GAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || | ||| ||| | | || ||| || || || | || |||| ||||| Sbjct 193338 GACCAGCTACTAATCATTGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 193390 >seq7528 Length=2495505 Score = 89.7 bits (98), Expect = 1e-15 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||| ||||| | | ||||| ||||| |||||||| | | ||| |||| | Sbjct 1571293 AAAAAAAGTTCATGACTCGTAGG-CCTTCTACCTTCACGTGGCATTGCTACGTCAGGATT 1571351 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || |||| |||||||||||||||||| |||||||| ||||||| Sbjct 1571352 TCGCCCATTGTGGAAAATTCATCACTGCTGCCTCCCGTAAGAGTTTGGGTTATGTCTCAA 1571411 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||| ||| | ||| ||| | | || ||| | || Sbjct 1571412 TCCCAGTGTGGTTGATCATCCTCTTAGACCAACTACTAATCATCGCCTTGGTAAGTTATT 1571471 Query 261 ACCCCGCCTACTACCTAATGGAAC 284 || | || |||| |||||| ||| Sbjct 1571472 GCCTCACCAACTAGCTAATGAAAC 1571495 >seq31919 Length=2315549 Score = 84.2 bits (92), Expect = 5e-14 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| ||||| ||||||||| | | ||| |||| || Sbjct 287453 AAAAGAAGTTCATGACCCGTAGG-CCTTCTACCTTCACGCGGCATTGCTCCGTCAGGCTT 287395 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 |||||||||| || ||||| |||||||||||||||||| ||||| Sbjct 287394 TCGTCCATTGTAGAAAATTCCCCACTGCTGCCTCCCGTAGAAGTTT 287349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068445479040