Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2869 556 4e-156 seq4367 334 2e-89 seq18130 228 2e-57 seq9713 165 2e-38 seq16874 150 5e-34 seq28776 129 2e-27 seq29658 116 1e-23 seq17094 84.2 7e-14 >seq2869 Length=57491 Score = 556 bits (616), Expect = 4e-156 Identities = 434/511 (85%), Gaps = 9/511 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| Sbjct 35175 GTACTCATTCCAATTACCAGACTCAAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 35233 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 35234 CCCTGTGTCATGATTGGGTAATTTGCGCACCTGCTGCCTTCCTTGGATGTGGTAGTCGTT 35293 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 || ||||||||||||||| |||||||||||||||| |||| |||||| ||||||||| Sbjct 35294 TCCCAGGCTCCCTCTCCGAAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 35353 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| ||||||||||||||||||||||||| ||||||||||||||| | || ||||| Sbjct 35354 GGCCATTATCCTACCATCGAAAGTTGATAGGACAGAAATTTGAATGATGCGTCACCGGCA 35413 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295 ||| || | |||||| | ||||||| |||||||| ||| | | | || | | Sbjct 35414 CAAGGGTCGTGCGATCCAACAAGTTATCATGAATCATCAAAGCAACAGGCAGAGTCTGTG 35473 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 ||| ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||| Sbjct 35474 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 35533 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||||| Sbjct 35534 CTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGATT 35592 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 ||||||| |||||||| |||||| || | ||| | | ||||||| |||||||||||||| Sbjct 35593 TAATGAGTCATTCGCAATTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTA 35652 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 35653 ATCTTTGAGACAAGCATATGACTACTGGCAG 35683 >seq4367 Length=890232 Score = 334 bits (370), Expect = 2e-89 Identities = 210/225 (93%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| Sbjct 354498 GTACTCATTCCAATTACCAGACTCAAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 354440 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354439 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 354380 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 354379 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 354320 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354319 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 354275 >seq18130 Length=954347 Score = 228 bits (252), Expect = 2e-57 Identities = 144/156 (92%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 285765 TGGGTAATTTGCTCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAAGCTCCCTC 285706 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 |||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||| Sbjct 285705 TCCGAAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCCTAC 285646 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATGAACC 230 |||||||||||||||||| | |||||||||||| || Sbjct 285645 CATCGAAAGTTGATAGGGGAAAAATTTGAATGATCC 285610 >seq9713 Length=89002 Score = 165 bits (182), Expect = 2e-38 Identities = 132/158 (84%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||| |||| ||| | | |||| |||||||| ||||||||| Sbjct 74385 GTACTCATTCCAATTATCAGACTCAATGG-GTTTGGTATTGTTATTTATTATCACTACCT 74327 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| ||||| |||||||||| ||||| ||||||||||||||||||||| |||| Sbjct 74326 CCCCGTGTTAGGATTAGGTAATTTGCATGCCTGTTGCCTTCCTTGGATGTGGTAGTCGTT 74267 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||||||||||| ||| | |||| |||||||||||| || Sbjct 74266 TCTCAGGCTCCTTCTTCTGAATTGAACCCTAATTCTCC 74229 >seq16874 Length=185766 Score = 150 bits (166), Expect = 5e-34 Identities = 143/180 (79%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 |||||| |||||| || |||||| |||||||||||| | | | || || | ||| Sbjct 49810 AAGGCCGTGCGATCCGACGAGTTATCATGAATCACCAAAGCAACAGGCAGAGCCTGTGTT 49869 Query 302 ----TTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGGTTTTTAGCATGTATTAGCT 356 ||||||||||||||| || ||||||| || |||||||||| | ||| ||||||||| Sbjct 49870 GACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTAGCT 49929 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| ||| |||||| ||||| || ||| |||||| |||| |||||||||||| Sbjct 49930 CTAGAATTACTACGATTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGATTTA 49988 >seq28776 Length=557903 Score = 129 bits (142), Expect = 2e-27 Identities = 124/158 (78%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||||| | | |||| | || | |||| ||||| || ||||||||| Sbjct 313417 GTGCTCATTCCAATTACCAAATCCAATA-AGTCAAGTATTGTTATTTTTTATCACTACCT 313359 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | || ||||||| ||||| | |||| ||||||||||| ||||||||| |||| Sbjct 313358 CCTCATTTCAAGATTGGGAAATTTTCATGCCTTTTGCCTTCCTTGAATGTGGTAGTCGTT 313299 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||||| ||| |||| ||||| |||||||||||| || Sbjct 313298 TCTCAAGCTTTCTCTTTGGAATTGAACCCTAATTCTCC 313261 >seq29658 Length=1595399 Score = 116 bits (128), Expect = 1e-23 Identities = 123/159 (77%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 201 AAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTT 259 || |||||||||||||||||||||||| |||||||| ||| || |||||||| | | Sbjct 569815 AAATTGATAGGGCAGAAATTTGAATGATGAGTCGCCGGCACAAGGGTCATGCGATCTGAT 569874 Query 260 AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----GTTGGTTTTTTATCTAATAAA 315 |||||| |||||| | ||| | | | | || |||| |||||||||||||| Sbjct 569875 GAGTTATCATGAATAATCAAAGCAACATGCTGAGCTTGTGTTGACCTTTTATCTAATAAA 569934 Query 316 TACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 | || ||||||| ||||||||||||| | |||||||||| Sbjct 569935 TGCATCCCTTCCAGAAGTCGGGGTTTGTTGCATGTATTA 569973 >seq17094 Length=726192 Score = 84.2 bits (92), Expect = 7e-14 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||| |||| || | |||||| | || | | || ||||||||||| ||||||| || Sbjct 31387 TCTCCAAAATCAAATCATAATTCTCTGTCATCTGTCACTACCATGGTAGACCACTATTCT 31446 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGC 251 |||||| ||| ||||||| |||||||||||| | ||||||| | || ||||| Sbjct 31447 ACCATCAAAAATTGATAGAATAGAAATTTGAATAATATATCGCCGATACAAAAATCATGC 31506 Query 252 GATTCGTTAAGTTATTATGAATCACCAA 279 || ||||||||| ||||| ||| Sbjct 31507 AATCGAACTAGTTATTATAAATCATCAA 31534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509899000320