Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq75419 93.3 4e-17 seq8 93.3 4e-17 seq17952 87.8 2e-15 seq15691 87.8 2e-15 seq6 87.8 2e-15 seq13 84.2 2e-14 seq4 84.2 2e-14 seq2 84.2 2e-14 seq1 84.2 2e-14 >seq75419 Length=160230 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 111208 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 111265 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 111266 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 111315 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 137723 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 137666 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 137665 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 137616 >seq8 Length=127390875 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 21043706 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 21043649 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 21043648 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 21043599 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 21009648 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 21009705 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || || || || ||| || ||| |||||||| |||||||||||| || Sbjct 21009706 GGGGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 21009755 Score = 80.6 bits (88), Expect = 3e-13 Identities = 82/106 (77%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | ||| | ||| ||||||||||||| || |||| ||| | || ||| | Sbjct 30625606 TAAGGAACTTGATAAAATAACCTTGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 30625663 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAG 185 |||| ||||| || || | | |||||||||||| ||||| |||| Sbjct 30625664 GAGGTCGCAGTGACTAAGCCTGGGCAACTGTTTACAAAAAATACAG 30625709 >seq17952 Length=119951 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||||||||||| |||| || |||| ||| | || ||| | Sbjct 77835 TAAGGAACTCGGCAAAATAGCCCTGTAACTTTGGGAGAAGGGGTGCCTCCTCACAAA--G 77778 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || | ||| || ||| || ||| |||||||| |||||||||||| || Sbjct 77777 GGGGTCACAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 77728 >seq15691 Length=450 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||| ||| || |||| || | || ||| || Sbjct 31 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCAGGAGAAGGGGTGTCTCCTCACAAAGGG 90 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | ||||| || |||| || ||| |||||||| |||||||||||| || Sbjct 91 G--GTCGCAGTGACTAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 138 >seq6 Length=121339338 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | |||||||||||||||| || ||| ||| | || ||| || Sbjct 106938050 TAAGGAACTCGGCAAAATAGCCCTGTAACTTCGGGAGAAGAGGTGCCTCCTCACAAAAGG 106938109 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||||| || ||| || || || |||||| |||||||||||| || Sbjct 106938110 --GGTCGCAGTGATCAGGCCCGGGAAATTGTTTACCAAAAACACAGGTCT 106938157 >seq13 Length=144148110 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | |||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 88401821 TAAGGAACTCGACAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGTCTCCTCACAAAGGG 88401762 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 88401761 G--GTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 88401714 >seq4 Length=137675496 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 87 CTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCG 146 || |||||| | ||| |||||||||||| || |||| ||| | || ||| ||| | || Sbjct 27199713 CTTGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGG--GTCG 27199656 Query 147 CAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||| || |||||| || |||||||| |||||||||||| || ||| || Sbjct 27199655 CAGTGACCAGGTCCGAGCGACTGTTTACCAAAAACACAGGTCTTTGCAAA 27199606 Score = 73.4 bits (80), Expect = 4e-11 Identities = 73/94 (78%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 70830802 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 70830859 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTA 173 | || ||||| || ||| || ||| |||||||| Sbjct 70830860 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTA 70830893 >seq2 Length=101023042 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||| ||||| || ||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 18108088 TAATGAACTCGGTAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 18108145 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 18108146 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 18108195 >seq1 Length=147124936 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| ||||||| |||| || ||| ||| | || ||| || Sbjct 30409851 TAAGGAACTCGGCAAAATAGCCCCGTAACTTAGGGAGAAGAGGTGCCTCCTCACAAAGGG 30409792 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 30409791 GAT--CGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 30409744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530811893826