Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28]
75,419 sequences; 1,694,597,732 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq75419 93.3 4e-17
seq8 93.3 4e-17
seq17952 87.8 2e-15
seq15691 87.8 2e-15
seq6 87.8 2e-15
seq13 84.2 2e-14
seq4 84.2 2e-14
seq2 84.2 2e-14
seq1 84.2 2e-14
>seq75419
Length=160230
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 111208 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 111265
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 111266 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 111315
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 137723 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 137666
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 137665 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 137616
>seq8
Length=127390875
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 21043706 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 21043649
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 21043648 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 21043599
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 21009648 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 21009705
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || || || || ||| || ||| |||||||| |||||||||||| ||
Sbjct 21009706 GGGGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 21009755
Score = 80.6 bits (88), Expect = 3e-13
Identities = 82/106 (77%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| | ||| | ||| ||||||||||||| || |||| ||| | || ||| |
Sbjct 30625606 TAAGGAACTTGATAAAATAACCTTGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 30625663
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAG 185
|||| ||||| || || | | |||||||||||| ||||| ||||
Sbjct 30625664 GAGGTCGCAGTGACTAAGCCTGGGCAACTGTTTACAAAAAATACAG 30625709
>seq17952
Length=119951
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||||||||||| |||| || |||| ||| | || ||| |
Sbjct 77835 TAAGGAACTCGGCAAAATAGCCCTGTAACTTTGGGAGAAGGGGTGCCTCCTCACAAA--G 77778
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || | ||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 77777 GGGGTCACAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 77728
>seq15691
Length=450
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||| ||| || |||| || | || ||| ||
Sbjct 31 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCAGGAGAAGGGGTGTCTCCTCACAAAGGG 90
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| | ||||| || |||| || ||| |||||||| |||||||||||| ||
Sbjct 91 G--GTCGCAGTGACTAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 138
>seq6
Length=121339338
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | |||||||||||||||| || ||| ||| | || ||| ||
Sbjct 106938050 TAAGGAACTCGGCAAAATAGCCCTGTAACTTCGGGAGAAGAGGTGCCTCCTCACAAAAGG 106938109
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
|| ||||| || ||| || || || |||||| |||||||||||| ||
Sbjct 106938110 --GGTCGCAGTGATCAGGCCCGGGAAATTGTTTACCAAAAACACAGGTCT 106938157
>seq13
Length=144148110
Score = 84.2 bits (92), Expect = 2e-14
Identities = 85/110 (77%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| | |||| | ||| |||||||||||| || |||| || | || ||| ||
Sbjct 88401821 TAAGGAACTCGACAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGTCTCCTCACAAAGGG 88401762
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| | ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 88401761 G--GTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 88401714
>seq4
Length=137675496
Score = 84.2 bits (92), Expect = 2e-14
Identities = 85/110 (77%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 87 CTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCG 146
|| |||||| | ||| |||||||||||| || |||| ||| | || ||| ||| | ||
Sbjct 27199713 CTTGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGG--GTCG 27199656
Query 147 CAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
||| || |||||| || |||||||| |||||||||||| || ||| ||
Sbjct 27199655 CAGTGACCAGGTCCGAGCGACTGTTTACCAAAAACACAGGTCTTTGCAAA 27199606
Score = 73.4 bits (80), Expect = 4e-11
Identities = 73/94 (78%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 70830802 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 70830859
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTA 173
| || ||||| || ||| || ||| ||||||||
Sbjct 70830860 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTA 70830893
>seq2
Length=101023042
Score = 84.2 bits (92), Expect = 2e-14
Identities = 85/110 (77%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||| ||||| || ||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 18108088 TAATGAACTCGGTAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 18108145
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 18108146 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 18108195
>seq1
Length=147124936
Score = 84.2 bits (92), Expect = 2e-14
Identities = 85/110 (77%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| ||||||| |||| || ||| ||| | || ||| ||
Sbjct 30409851 TAAGGAACTCGGCAAAATAGCCCCGTAACTTAGGGAGAAGAGGTGCCTCCTCACAAAGGG 30409792
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
|| ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 30409791 GAT--CGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 30409744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530811893826
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |