Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq75419 113 5e-23 seq8 113 5e-23 seq9 107 2e-21 seq13 104 3e-20 seq2 98.7 1e-18 seq1 96.9 4e-18 seq15691 95.1 1e-17 seq10 86.0 7e-15 seq6 86.0 7e-15 seq4 86.0 7e-15 seq12 77.0 4e-12 >seq75419 Length=160230 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 111588 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 111529 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 111528 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 111470 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 111469 ACAAGGAATTTCGCTACCTTAGGACCGTTA 111440 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 137343 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 137402 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 137403 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 137461 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 137462 ACAAGGAATTTCGCTACCTTAGGACCGTTA 137491 >seq8 Length=127390875 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 21043326 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 21043385 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 21043386 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 21043444 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 21043445 ACAAGGAATTTCGCTACCTTAGGACCGTTA 21043474 Score = 104 bits (114), Expect = 3e-20 Identities = 113/150 (75%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 21114184 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 21114125 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| ||||| |||||||||| Sbjct 21114124 C-CTCTCTCCGAGACAGTGCCAGATCGT-TACGCCTTTCGTGCGGGTCGAAACTTACCCG 21114067 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 21114066 ACAAGGAATTTCGCTACCTTAGGACCGTTA 21114037 Score = 93.3 bits (102), Expect = 5e-17 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | ||||||||| | | | | ||||||| Sbjct 21126519 GGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCTATGTCGGAGACAGCGGGG 21126578 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 21126579 CAGTCGTTACACCATTCGTGCAGGTTGCTACTTATGCGACAAGGAATTTCGCTACCTTAG 21126638 Query 166 GACCGTTA 173 ||| |||| Sbjct 21126639 GACAGTTA 21126646 Score = 82.4 bits (90), Expect = 8e-14 Identities = 99/136 (73%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 21010001 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 21009942 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| ||||||||||||||| Sbjct 21009941 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGAGTCGGAACTTACCCG 21009883 Query 144 ACAAGGAATTTCGCTA 159 |||||||||||||||| Sbjct 21009882 ACAAGGAATTTCGCTA 21009867 Score = 80.6 bits (88), Expect = 3e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||| || |||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 30625914 CCTTTCGTACAAGTCGAAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTA 30625858 >seq9 Length=96604005 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 87010416 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 87010357 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 87010356 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 87010297 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 87010296 GACAAGGAATTTCGCTACCTTAGGACAGTTA 87010266 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 92282584 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 92282525 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 92282524 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 92282465 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 92282464 GACAAGGAATTTCGCTACCTTAGGACAGTTA 92282434 >seq13 Length=144148110 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||||||| Sbjct 88401441 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACTGAG 88401500 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || |||||| |||||||||||||||| Sbjct 88401501 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGTGGGTCGGAACTTACCCG 88401559 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 | || ||||||||||||||||||||||||| Sbjct 88401560 ATAAAGAATTTCGCTACCTTAGGACCGTTA 88401589 >seq2 Length=101023042 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 18108468 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 18108409 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | |||||| ||| || |||||| |||||||||||||||| Sbjct 18108408 C-CTCTCTCCGAGACAATGCCCAGATCGTTACGCCTTTCGTGGGGGTCGGAACTTACCCG 18108350 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||| |||||||| Sbjct 18108349 ACAAGGAATTTCGCTACCTTAAGACCGTTA 18108320 >seq1 Length=147124936 Score = 96.9 bits (106), Expect = 4e-18 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85 ||||||| |||| ||||||| || |||||||||| || | | ||||||| |||| Sbjct 30409472 GGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC 30409531 Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | || | || ||| || ||||||| |||||||||||||||| Sbjct 30409532 -CTCTCTCCGAAATAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGG 30409590 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 30409591 CAAGGAATTTCGCTACCTTAGGACCGTTA 30409619 Score = 93.3 bits (102), Expect = 5e-17 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 51 TCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNNNNNNN 109 || |||||||||| || | | | ||||||| |||| | | | ||||||| Sbjct 54563638 TCCGCATCTTCACAGACATTTCTATTTCACCGAGC-CTCTCTCCGAGACAGTGCCCAGAT 54563580 Query 110 NNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 169 ||| || ||||| | |||| ||||||||||||||||||||||||||||||||||||| Sbjct 54563579 CGTTACGCCTTTCGTTCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 54563520 Query 170 GTTA 173 |||| Sbjct 54563519 GTTA 54563516 Score = 93.3 bits (102), Expect = 5e-17 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||| ||||||| || ||||||||| || | | ||||||| ||| Sbjct 58270319 GGGTCTTTCTGTCTAGGTGCGGGTAGTCCGCATCTTCATAGACATGTCTATTTCACCGAG 58270378 Query 85 C-TCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | || | ||||||| |||||| ||||||| ||| ||||||||||| Sbjct 58270379 CCTCTCTACCGAGACAGTGCCCCGATCGTTACACCTTTCGTGCGAGTCAGAACTTACCCG 58270438 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||| |||||| |||||||||||||||||| Sbjct 58270439 ACAATGAATTTTGCTACCTTAGGACCGTTA 58270468 >seq15691 Length=450 Score = 95.1 bits (104), Expect = 1e-17 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || ||||||| || || | | ||||||| || Sbjct 411 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTTACAGACATGTCTATTTCACCAAG 352 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || |||||| ||||||||||||||||| Sbjct 351 C-CTCTCTCCGAGACAGTGCCCACATCGTTACGCCTTTCGTGTAGGTCGGAACTTACCCG 293 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 | ||||||||| |||||||||||||||||| Sbjct 292 ATAAGGAATTTTGCTACCTTAGGACCGTTA 263 >seq10 Length=114683840 Score = 86.0 bits (94), Expect = 7e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 40209022 CCTTTCGTGCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACCTTAGGATCGTTA 40208966 >seq6 Length=121339338 Score = 86.0 bits (94), Expect = 7e-15 Identities = 95/128 (74%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 47 GTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNNN 105 ||| || |||||||||| || | | ||||||| |||| | | | ||||||| Sbjct 89407623 GTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCCGAGACAGTGCCC 89407681 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||| | || |||| ||||||||||||||||| |||||||||||||||||||| Sbjct 89407682 AGATCGTTACGCATTTTGTGCGGGTCGGAACTTACCCGATAAGGAATTTCGCTACCTTAG 89407741 Query 166 GACCGTTA 173 |||||||| Sbjct 89407742 GACCGTTA 89407749 Score = 84.2 bits (92), Expect = 2e-14 Identities = 107/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85 ||||||| |||| ||||||| | |||||||||| || | | ||||||| |||| Sbjct 106938429 GGTCTTTCTGTCCAGGTGCGGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGC 106938370 Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | ||||||| ||| || ||||||| |||| |||||||| || Sbjct 106938369 -CTCTCTCCGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGAGTCGAAACTTACCTGA 106938311 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||| |||||| ||||||||||||||||| Sbjct 106938310 CAAGAAATTTCCCTACCTTAGGACCGTTA 106938282 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| |||||| ||| | |||||||| |||||||||||||||||||||||||| || Sbjct 85963108 TACACCTTTCGTGTGGGTTGAAACTTACCTAACAAGGAATTTCGCTACCTTAGGACCATT 85963049 Query 173 A 173 | Sbjct 85963048 A 85963048 >seq4 Length=137675496 Score = 86.0 bits (94), Expect = 7e-15 Identities = 90/120 (75%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 55 CATCTTCACCGATACTACAATTTCACTGAGCTCACGGT-TGAGACAGNNNNNNNNNNNNT 113 ||||||||| || | | ||||||| |||| | | | |||||||| | Sbjct 27199370 CATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCTGAGACAGTGCCCAGATCGTT 27199428 Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || || || |||| |||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 27199429 ACGCCTTTTGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCATAGGACCGTTA 27199488 >seq12 Length=146008498 Score = 77.0 bits (84), Expect = 4e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || || |||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 52632160 CCTTTTGTGCGAGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATTGTTA 52632216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546800203881