Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28]
75,419 sequences; 1,694,597,732 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq75419 113 5e-23
seq8 113 5e-23
seq9 107 2e-21
seq13 104 3e-20
seq2 98.7 1e-18
seq1 96.9 4e-18
seq15691 95.1 1e-17
seq10 86.0 7e-15
seq6 86.0 7e-15
seq4 86.0 7e-15
seq12 77.0 4e-12
>seq75419
Length=160230
Score = 113 bits (124), Expect = 5e-23
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | ||||||| |||
Sbjct 111588 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 111529
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 111528 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 111470
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 111469 ACAAGGAATTTCGCTACCTTAGGACCGTTA 111440
Score = 113 bits (124), Expect = 5e-23
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | ||||||| |||
Sbjct 137343 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 137402
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 137403 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 137461
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 137462 ACAAGGAATTTCGCTACCTTAGGACCGTTA 137491
>seq8
Length=127390875
Score = 113 bits (124), Expect = 5e-23
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | ||||||| |||
Sbjct 21043326 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 21043385
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 21043386 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 21043444
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 21043445 ACAAGGAATTTCGCTACCTTAGGACCGTTA 21043474
Score = 104 bits (114), Expect = 3e-20
Identities = 113/150 (75%), Gaps = 3/150 (2%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | ||||||| |||
Sbjct 21114184 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 21114125
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||| ||||||||||
Sbjct 21114124 C-CTCTCTCCGAGACAGTGCCAGATCGT-TACGCCTTTCGTGCGGGTCGAAACTTACCCG 21114067
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 21114066 ACAAGGAATTTCGCTACCTTAGGACCGTTA 21114037
Score = 93.3 bits (102), Expect = 5e-17
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105
|||| || |||||||||| || | | ||||||||| | | | | |||||||
Sbjct 21126519 GGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCTATGTCGGAGACAGCGGGG 21126578
Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165
|||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 21126579 CAGTCGTTACACCATTCGTGCAGGTTGCTACTTATGCGACAAGGAATTTCGCTACCTTAG 21126638
Query 166 GACCGTTA 173
||| ||||
Sbjct 21126639 GACAGTTA 21126646
Score = 82.4 bits (90), Expect = 8e-14
Identities = 99/136 (73%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | ||||||| |||
Sbjct 21010001 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 21009942
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| |||||||||||||||
Sbjct 21009941 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGAGTCGGAACTTACCCG 21009883
Query 144 ACAAGGAATTTCGCTA 159
||||||||||||||||
Sbjct 21009882 ACAAGGAATTTCGCTA 21009867
Score = 80.6 bits (88), Expect = 3e-13
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| ||||| || |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 30625914 CCTTTCGTACAAGTCGAAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTA 30625858
>seq9
Length=96604005
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 87010416 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 87010357
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 87010356 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 87010297
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 87010296 GACAAGGAATTTCGCTACCTTAGGACAGTTA 87010266
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 92282584 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 92282525
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 92282524 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 92282465
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 92282464 GACAAGGAATTTCGCTACCTTAGGACAGTTA 92282434
>seq13
Length=144148110
Score = 104 bits (114), Expect = 3e-20
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | |||||||||||
Sbjct 88401441 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACTGAG 88401500
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || |||||| ||||||||||||||||
Sbjct 88401501 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGTGGGTCGGAACTTACCCG 88401559
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
| || |||||||||||||||||||||||||
Sbjct 88401560 ATAAAGAATTTCGCTACCTTAGGACCGTTA 88401589
>seq2
Length=101023042
Score = 98.7 bits (108), Expect = 1e-18
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | ||||||| |||
Sbjct 18108468 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 18108409
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | |||||| ||| || |||||| ||||||||||||||||
Sbjct 18108408 C-CTCTCTCCGAGACAATGCCCAGATCGTTACGCCTTTCGTGGGGGTCGGAACTTACCCG 18108350
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||| ||||||||
Sbjct 18108349 ACAAGGAATTTCGCTACCTTAAGACCGTTA 18108320
>seq1
Length=147124936
Score = 96.9 bits (106), Expect = 4e-18
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85
||||||| |||| ||||||| || |||||||||| || | | ||||||| ||||
Sbjct 30409472 GGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC 30409531
Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
| | | || | || ||| || ||||||| ||||||||||||||||
Sbjct 30409532 -CTCTCTCCGAAATAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGG 30409590
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||
Sbjct 30409591 CAAGGAATTTCGCTACCTTAGGACCGTTA 30409619
Score = 93.3 bits (102), Expect = 5e-17
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 51 TCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNNNNNNN 109
|| |||||||||| || | | | ||||||| |||| | | | |||||||
Sbjct 54563638 TCCGCATCTTCACAGACATTTCTATTTCACCGAGC-CTCTCTCCGAGACAGTGCCCAGAT 54563580
Query 110 NNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 169
||| || ||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 54563579 CGTTACGCCTTTCGTTCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 54563520
Query 170 GTTA 173
||||
Sbjct 54563519 GTTA 54563516
Score = 93.3 bits (102), Expect = 5e-17
Identities = 109/150 (73%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| ||| ||||||| || ||||||||| || | | ||||||| |||
Sbjct 58270319 GGGTCTTTCTGTCTAGGTGCGGGTAGTCCGCATCTTCATAGACATGTCTATTTCACCGAG 58270378
Query 85 C-TCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| || | ||||||| |||||| ||||||| ||| |||||||||||
Sbjct 58270379 CCTCTCTACCGAGACAGTGCCCCGATCGTTACACCTTTCGTGCGAGTCAGAACTTACCCG 58270438
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||| |||||| ||||||||||||||||||
Sbjct 58270439 ACAATGAATTTTGCTACCTTAGGACCGTTA 58270468
>seq15691
Length=450
Score = 95.1 bits (104), Expect = 1e-17
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || ||||||| || || | | ||||||| ||
Sbjct 411 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTTACAGACATGTCTATTTCACCAAG 352
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || |||||| |||||||||||||||||
Sbjct 351 C-CTCTCTCCGAGACAGTGCCCACATCGTTACGCCTTTCGTGTAGGTCGGAACTTACCCG 293
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
| ||||||||| ||||||||||||||||||
Sbjct 292 ATAAGGAATTTTGCTACCTTAGGACCGTTA 263
>seq10
Length=114683840
Score = 86.0 bits (94), Expect = 7e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 40209022 CCTTTCGTGCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACCTTAGGATCGTTA 40208966
>seq6
Length=121339338
Score = 86.0 bits (94), Expect = 7e-15
Identities = 95/128 (74%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 47 GTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNNN 105
||| || |||||||||| || | | ||||||| |||| | | | |||||||
Sbjct 89407623 GTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCCGAGACAGTGCCC 89407681
Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165
||| | || |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 89407682 AGATCGTTACGCATTTTGTGCGGGTCGGAACTTACCCGATAAGGAATTTCGCTACCTTAG 89407741
Query 166 GACCGTTA 173
||||||||
Sbjct 89407742 GACCGTTA 89407749
Score = 84.2 bits (92), Expect = 2e-14
Identities = 107/149 (72%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85
||||||| |||| ||||||| | |||||||||| || | | ||||||| ||||
Sbjct 106938429 GGTCTTTCTGTCCAGGTGCGGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGC 106938370
Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
| | | ||||||| ||| || ||||||| |||| |||||||| ||
Sbjct 106938369 -CTCTCTCCGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGAGTCGAAACTTACCTGA 106938311
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||| |||||| |||||||||||||||||
Sbjct 106938310 CAAGAAATTTCCCTACCTTAGGACCGTTA 106938282
Score = 75.2 bits (82), Expect = 1e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||| |||||| ||| | |||||||| |||||||||||||||||||||||||| ||
Sbjct 85963108 TACACCTTTCGTGTGGGTTGAAACTTACCTAACAAGGAATTTCGCTACCTTAGGACCATT 85963049
Query 173 A 173
|
Sbjct 85963048 A 85963048
>seq4
Length=137675496
Score = 86.0 bits (94), Expect = 7e-15
Identities = 90/120 (75%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 55 CATCTTCACCGATACTACAATTTCACTGAGCTCACGGT-TGAGACAGNNNNNNNNNNNNT 113
||||||||| || | | ||||||| |||| | | | |||||||| |
Sbjct 27199370 CATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCTGAGACAGTGCCCAGATCGTT 27199428
Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| || || |||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 27199429 ACGCCTTTTGTGCGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCATAGGACCGTTA 27199488
>seq12
Length=146008498
Score = 77.0 bits (84), Expect = 4e-12
Identities = 51/57 (89%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| || |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 52632160 CCTTTTGTGCGAGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATTGTTA 52632216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546800203881
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |