Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28]
75,419 sequences; 1,694,597,732 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq11 80.6 2e-13
seq1 80.6 2e-13
seq44073 75.2 7e-12
seq10 71.6 8e-11
>seq11
Length=105699404
Score = 80.6 bits (88), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||
Sbjct 29905757 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCAA 29905814
Query 122 GCT 124
|||
Sbjct 29905815 GCT 29905817
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29799169 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29799226
Query 122 GCT 124
|||
Sbjct 29799227 GCT 29799229
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29804905 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29804962
Query 122 GCT 124
|||
Sbjct 29804963 GCT 29804965
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29814050 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29814107
Query 122 GCT 124
|||
Sbjct 29814108 GCT 29814110
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29832696 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29832753
Query 122 GCT 124
|||
Sbjct 29832754 GCT 29832756
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29849413 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29849470
Query 122 GCT 124
|||
Sbjct 29849471 GCT 29849473
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29878366 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29878423
Query 122 GCT 124
|||
Sbjct 29878424 GCT 29878426
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29898619 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29898676
Query 122 GCT 124
|||
Sbjct 29898677 GCT 29898679
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | || |||||||| |||||||||||||||||||||| | ||||||||
Sbjct 29910259 TTCAATCGGTAGGA-GCAACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCAA 29910316
Query 122 GCT 124
|||
Sbjct 29910317 GCT 29910319
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29919650 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29919707
Query 122 GCT 124
|||
Sbjct 29919708 GCT 29919710
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29938147 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29938204
Query 122 GCT 124
|||
Sbjct 29938205 GCT 29938207
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29955824 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29955881
Query 122 GCT 124
|||
Sbjct 29955882 GCT 29955884
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 30003479 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 30003536
Query 122 GCT 124
|||
Sbjct 30003537 GCT 30003539
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 30017824 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 30017881
Query 122 GCT 124
|||
Sbjct 30017882 GCT 30017884
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 30027296 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 30027353
Query 122 GCT 124
|||
Sbjct 30027354 GCT 30027356
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 30031201 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 30031258
Query 122 GCT 124
|||
Sbjct 30031259 GCT 30031261
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 30116578 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 30116521
Query 122 GCT 124
|||
Sbjct 30116520 GCT 30116518
Score = 75.2 bits (82), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 3/75 (4%)
Strand=Plus/Minus
Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109
||||| | ||||| || ||||||| | ||||||||||| ||| |||||||||||||||||
Sbjct 96164033 TCACTGAACCATT-CAATCGGTAGGA-GCGACGGGCGGTGTGGACAAAGGGCAGGGACGT 96163976
Query 110 AATACAACGCAAGCT 124
| | |||||| ||||
Sbjct 96163975 AGT-CAACGCGAGCT 96163962
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 96243329 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 96243272
Query 122 GCT 124
|||
Sbjct 96243271 GCT 96243269
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 96261590 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 96261533
Query 122 GCT 124
|||
Sbjct 96261532 GCT 96261530
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||| || |
Sbjct 29689383 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAATGCGA 29689440
Query 122 GCT 124
|||
Sbjct 29689441 GCT 29689443
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | | ||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29702306 TTCAATCGGTAGGA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29702363
Query 122 GCT 124
|||
Sbjct 29702364 GCT 29702366
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| | |||| | |||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29727177 TTCAATTGGTA-TGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29727234
Query 122 GCT 124
|||
Sbjct 29727235 GCT 29727237
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| | ||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29934002 TTCAATGGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29934059
Query 122 GCT 124
|||
Sbjct 29934060 GCT 29934062
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| | |
Sbjct 29946719 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACCCGA 29946776
Query 122 GCT 124
|||
Sbjct 29946777 GCT 29946779
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| || |||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 29983826 TTCAATCTGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 29983883
Query 122 GCT 124
|||
Sbjct 29983884 GCT 29983886
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| || |||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 96138906 TTCAATCAGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 96138849
Query 122 GCT 124
|||
Sbjct 96138848 GCT 96138846
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||| || |
Sbjct 96211177 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAATGCGA 96211120
Query 122 GCT 124
|||
Sbjct 96211119 GCT 96211117
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | |||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 96344455 TTCAATCGGTAGGA-GCGACGGGCGTTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 96344398
Query 122 GCT 124
|||
Sbjct 96344397 GCT 96344395
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| ||||||||||||||||||||| | |||||| |
Sbjct 96353267 TTCAATCGGTAGGA-GCGACGGGCGGTATGTACAAAGGGCAGGGACGTAGT-CAACGCGA 96353210
Query 122 GCT 124
|||
Sbjct 96353209 GCT 96353207
>seq1
Length=147124936
Score = 80.6 bits (88), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||
Sbjct 14457188 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCAA 14457245
Query 122 GCT 124
|||
Sbjct 14457246 GCT 14457248
Score = 80.6 bits (88), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||
Sbjct 14471200 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCAA 14471257
Query 122 GCT 124
|||
Sbjct 14471258 GCT 14471260
Score = 80.6 bits (88), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||
Sbjct 128943901 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCAA 128943844
Query 122 GCT 124
|||
Sbjct 128943843 GCT 128943841
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 14342025 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 14342082
Query 122 GCT 124
|||
Sbjct 14342083 GCT 14342085
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 14358783 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTACT-CAACGCGA 14358840
Query 122 GCT 124
|||
Sbjct 14358841 GCT 14358843
>seq44073
Length=5666
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 1074 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1131
Query 122 GCT 124
|||
Sbjct 1132 GCT 1134
>seq10
Length=114683840
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||| ||| || |||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 13985781 TTCAATCGATAGGAA-CGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 13985838
Query 122 GCT 124
|||
Sbjct 13985839 GCT 13985841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300587318420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |