Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq7 104 4e-20 seq13 100 5e-19 >seq7 Length=127721098 Score = 104 bits (114), Expect = 4e-20 Identities = 186/269 (69%), Gaps = 16/269 (6%) Strand=Plus/Plus Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAG 65 || || ||| | || || ||| |||| ||| |||| ||||| |||| ||||| |||| Sbjct 52467643 TGCCCGAGGTCGTGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAG 52467699 Query 66 TCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTT 125 | |||| ||| ||||||||||| || | ||||| | || |||||| Sbjct 52467700 TTGAACCCAGCGGTTCGGGTCGGAGCATGTGGGATCTCGCTTGGAGGGCGGGTTTTGGTT 52467759 Query 126 ACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAA 183 || ||||||| |||||||| | || ||||||| | | | || |||| | Sbjct 52467760 ACGGGGTCGGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAATGA-------- 52467811 Query 184 AGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTG 243 |||| |||||||||||||||||| || | ||| |||||||| || ||||| |||| Sbjct 52467812 AGGAAGGGCAAAATAGTAAATTGGAGAAACTCACTGTCCCTGATGAGTTCTCTGGGTTTG 52467871 Query 244 TGCAATCTGGATGCTGTGTGGAGATCTGA 272 | ||||| || |||| || ||| || ||| Sbjct 52467872 TCCAATCAGGCTGCTATGCGGAAATTTGA 52467900 >seq13 Length=144148110 Score = 100 bits (110), Expect = 5e-19 Identities = 188/276 (68%), Gaps = 14/276 (5%) Strand=Plus/Plus Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60 || |||| || || ||| | |||| ||| | |||||| || || |||| |||| Sbjct 37342903 CGGGTCAGTGCCCGAGGTCGAGTGTTGGGATCGGTAAAGGCGGGAAATTGATGAACTGGG 37342962 Query 61 GAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACC- 119 |||| ||| | ||| ||||||||| | || ||| || | |||||| Sbjct 37342963 CAGAGCTGGACACTGCCGTTCGGGTCGGAGCAAGGGG----GATTATGCTTGTGGGACGG 37343018 Query 120 ---TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAAC 176 |||||||||||||||| |||||||| | || ||||| || | | | || | | Sbjct 37343019 GTGTTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC 37343078 Query 177 AACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCT 236 ||||| ||||||| | |||||||| || || |||| |||||||| |||||| Sbjct 37343079 ------AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTACCTGATGAGTTTTCT 37343132 Query 237 GGATTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272 || ||||| || || || |||| |||||| |||||| Sbjct 37343133 GGGTTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 37343168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917707351904