Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28]
75,419 sequences; 1,694,597,732 total letters
Query= AAMG01001756.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq7 104 4e-20
seq13 100 5e-19
>seq7
Length=127721098
Score = 104 bits (114), Expect = 4e-20
Identities = 186/269 (69%), Gaps = 16/269 (6%)
Strand=Plus/Plus
Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAG 65
|| || ||| | || || ||| |||| ||| |||| ||||| |||| ||||| ||||
Sbjct 52467643 TGCCCGAGGTCGTGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAG 52467699
Query 66 TCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTT 125
| |||| ||| ||||||||||| || | ||||| | || ||||||
Sbjct 52467700 TTGAACCCAGCGGTTCGGGTCGGAGCATGTGGGATCTCGCTTGGAGGGCGGGTTTTGGTT 52467759
Query 126 ACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAA 183
|| ||||||| |||||||| | || ||||||| | | | || |||| |
Sbjct 52467760 ACGGGGTCGGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAATGA-------- 52467811
Query 184 AGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTG 243
|||| |||||||||||||||||| || | ||| |||||||| || ||||| ||||
Sbjct 52467812 AGGAAGGGCAAAATAGTAAATTGGAGAAACTCACTGTCCCTGATGAGTTCTCTGGGTTTG 52467871
Query 244 TGCAATCTGGATGCTGTGTGGAGATCTGA 272
| ||||| || |||| || ||| || |||
Sbjct 52467872 TCCAATCAGGCTGCTATGCGGAAATTTGA 52467900
>seq13
Length=144148110
Score = 100 bits (110), Expect = 5e-19
Identities = 188/276 (68%), Gaps = 14/276 (5%)
Strand=Plus/Plus
Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60
|| |||| || || ||| | |||| ||| | |||||| || || |||| ||||
Sbjct 37342903 CGGGTCAGTGCCCGAGGTCGAGTGTTGGGATCGGTAAAGGCGGGAAATTGATGAACTGGG 37342962
Query 61 GAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACC- 119
|||| ||| | ||| ||||||||| | || ||| || | ||||||
Sbjct 37342963 CAGAGCTGGACACTGCCGTTCGGGTCGGAGCAAGGGG----GATTATGCTTGTGGGACGG 37343018
Query 120 ---TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAAC 176
|||||||||||||||| |||||||| | || ||||| || | | | || | |
Sbjct 37343019 GTGTTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC 37343078
Query 177 AACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCT 236
||||| ||||||| | |||||||| || || |||| |||||||| ||||||
Sbjct 37343079 ------AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTACCTGATGAGTTTTCT 37343132
Query 237 GGATTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272
|| ||||| || || || |||| |||||| ||||||
Sbjct 37343133 GGGTTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 37343168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 917707351904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |