Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28]
75,419 sequences; 1,694,597,732 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq64250 84.2 2e-14
seq9 75.2 1e-11
seq8 73.4 4e-11
>seq64250
Length=210
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| || | ||| |||||||||| || |||||| ||||
Sbjct 93 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAACGCCGACTTTCGTCCCTG 152
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || ||| |||||||||| ||| |||| |||||||
Sbjct 153 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 198
>seq9
Length=96604005
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 92282932 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 92282873
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 92282872 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 92282824
>seq8
Length=127390875
Score = 73.4 bits (80), Expect = 4e-11
Identities = 79/105 (75%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
||||||||||||||||||| |||| |||| | |||||||| | | ||||| ||||
Sbjct 30561874 TTGAGCGATGGCCCTTCCACTCAGCACCATCAGATCACTAAGGCTGACTTTCATCCCTGT 30561933
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
|| | || ||| |||||||||| ||| |||| |||||||
Sbjct 30561934 TCAATAGGTGGGTCTTGCAGTCAAGCTTTCTTCTGCCTTTGCACT 30561978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473253977628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |