Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 150 1e-31 >seq9 Length=96604005 Score = 150 bits (166), Expect = 1e-31 Identities = 544/840 (65%), Gaps = 12/840 (1%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || || ||||| | ||||| |||||| |||| | Sbjct 49335849 ATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGATCTGTCTTCCGTT 49335908 Query 61156 ATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | | ||||||| || | | || | || || || ||||||| || || | || Sbjct 49335909 CTTCGTCACTGGGAAGCTCTCACCGCT-GACGAGCACCACTTCATTAGTCACGTTCTCGC 49335967 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 || |||||||| || || || || ||| |||||| | | || ||| | | || Sbjct 49335968 CTTTTTTGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGA 49336027 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||| ||| | || ||||||||| ||| || || ||||| || || || || ||| |||| Sbjct 49336028 GGTCCAAATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTATCGAAAATATCCA 49336087 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 ||| |||||||||||| | || |||| || ||||| | || | | || || | | | Sbjct 49336088 CTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGACGAAAAG-AACC 49336146 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | ||| |||||||||||| | ||| ||| ||||| || ||||| | | Sbjct 49336147 GTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGA 49336206 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 | |||||| | | | | || || | ||||| || | || ||||| || | Sbjct 49336207 AATGGATCGACGGCGGA---GAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAG 49336263 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | |||||| ||| || || || |||||||| || || | || | | Sbjct 49336264 AGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAA 49336323 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 ||||||| | || ||| || ||||| || ||||| || || || | || ||||||| Sbjct 49336324 TGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTGTGATT 49336383 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | ||| ||||| | | | | || ||| || | || || || || ||| | | Sbjct 49336384 TCGCTTGCTTGCTGTACTCTCTC-CTCAGGTCAAAGCTGAGT--GAAGAACGCGTGAGAG 49336440 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753 ||| || | || ||||| || || ||| || | || ||| ||||| | Sbjct 49336441 GGATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGTATGCGATGCTCTGCCCTGCG 49336500 Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 | | | || ||||| | | ||||| ||||| || || || || || || || Sbjct 49336501 CGTTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGT 49336560 Query 61814 TGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATG 61872 |||||| | || ||||| | | ||| || || | ||||||||||||| ||| Sbjct 49336561 TGTTGGGAGCGTTAGGGTACGGA-AAGATGTACAACGTGGTCAACCCATTTGATTGGATG 49336619 Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || |||| ||| || | || || || ||||| ||||||||| | || || || |||||| Sbjct 49336620 GAACTGATATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAA 49336679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397202567794160