Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq19250 96.9 6e-18 seq5139 96.9 6e-18 seq17487 93.3 8e-17 seq26681 82.4 1e-13 >seq19250 Length=824693 Score = 96.9 bits (106), Expect = 6e-18 Identities = 186/270 (69%), Gaps = 17/270 (6%) Strand=Plus/Plus Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAG 65 || || ||| | || || ||| |||| ||| |||| ||||| |||| ||||| |||| Sbjct 387066 TGCCCGAGGTCGTGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAG 387122 Query 66 TCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTT 125 | |||| ||| ||||||||||| || | ||||| | || |||||| Sbjct 387123 TTGAACCCAGCGGTTCGGGTCGGAGCATGTGGGATCTCGCTTGGAGGGCGGGTTTTGGTT 387182 Query 126 ACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAA 183 || ||||||| |||||||| | || ||||||| | | | || |||| | Sbjct 387183 ACGGGGTCGGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAAT--------TA 387234 Query 184 AGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTT-TCTGGATTT 242 |||| |||||||||||||||| | || | ||| |||||||| ||| ||||| ||| Sbjct 387235 AGGAAGGGCAAAATAGTAAATGGGAGAAACTCACTGTCCCTGATGAGTTTCTCTGGGTTT 387294 Query 243 GTGCAATCTGGATGCTGTGTGGAGATCTGA 272 || ||||| || |||| || ||| || ||| Sbjct 387295 GTCCAATCAGGCTGCTATGCGGAAATTTGA 387324 >seq5139 Length=359788 Score = 96.9 bits (106), Expect = 6e-18 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAAC 179 |||||||||||||||| |||||||| | || ||||| || | | | || | | Sbjct 116119 TTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC--- 116063 Query 180 AAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGA 239 ||||| ||||||| | |||||||| || || |||| |||||||| |||||||| Sbjct 116062 ---AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTGCCTGATGAGTTTTCTGGG 116006 Query 240 TTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272 ||||| || || || |||| |||||| |||||| Sbjct 116005 TTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 115973 Score = 93.3 bits (102), Expect = 8e-17 Identities = 112/153 (73%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAAC 179 |||||||||||||||| |||||||| | || ||||| || | | | || | | Sbjct 120305 TTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC--- 120249 Query 180 AAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGA 239 ||||| ||||||| | |||||||| || || |||| || ||||| |||||||| Sbjct 120248 ---AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTGCCCGATGAGTTTTCTGGG 120192 Query 240 TTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272 ||||| || || || |||| |||||| |||||| Sbjct 120191 TTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 120159 >seq17487 Length=248647 Score = 93.3 bits (102), Expect = 8e-17 Identities = 112/153 (73%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAAC 179 |||||||||||||||| |||||||| | || ||||| || | | | || | | Sbjct 28916 TTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC--- 28972 Query 180 AAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGA 239 ||||| ||||||| | |||||||| || || |||| || ||||| |||||||| Sbjct 28973 ---AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTGCCCGATGAGTTTTCTGGG 29029 Query 240 TTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272 ||||| || || || |||| |||||| |||||| Sbjct 29030 TTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 29062 >seq26681 Length=123048 Score = 82.4 bits (90), Expect = 1e-13 Identities = 178/261 (68%), Gaps = 24/261 (9%) Strand=Plus/Plus Query 21 TGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAGTCCGACCCGAAT 77 || || ||| |||| ||| |||| ||||| |||| ||||| ||||| ||| Sbjct 101104 TGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAGTTGAGCCCAGCG 101160 Query 78 GTTAAAGTCGGAGCATGCGGTGTGGATCTTGGT--GATGG--GACCTTGGTTACCGGGTC 133 ||| ||||||||||| || ||||| | | || || | |||||||| ||||| Sbjct 101161 GTTCGGGTCGGAGCATGTGG----GATCTCGCTTGGAAGGCGGGTTTTGGTTACGGGGTC 101216 Query 134 GGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAAAGGATGGG 191 || |||||||| | || ||||||| | | | || |||| | |||| ||| Sbjct 101217 GGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAATGA--------AGGAAGGG 101268 Query 192 CAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCT 251 ||| ||||||||||| || | |||| |||||||| || ||||| | ||| ||||| Sbjct 101269 CAACATAGTAAATTGGAGAAACTCAATGTCCCTGATGAGTTCTCTGGGTGTGTCCAATCA 101328 Query 252 GGATGCTGTGTGGAGATCTGA 272 || |||| || || || ||| Sbjct 101329 GGCTGCTATGCAGAAATTTGA 101349 Score = 82.4 bits (90), Expect = 1e-13 Identities = 178/261 (68%), Gaps = 24/261 (9%) Strand=Plus/Plus Query 21 TGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAGTCCGACCCGAAT 77 || || ||| |||| ||| |||| ||||| |||| ||||| ||||| ||| Sbjct 102378 TGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAGTTGAGCCCAGCG 102434 Query 78 GTTAAAGTCGGAGCATGCGGTGTGGATCTTGGT--GATGG--GACCTTGGTTACCGGGTC 133 ||| ||||||||||| || ||||| | | || || | |||||||| ||||| Sbjct 102435 GTTCGGGTCGGAGCATGTGG----GATCTCGCTTGGAAGGCGGGTTTTGGTTACGGGGTC 102490 Query 134 GGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAAAGGATGGG 191 || |||||||| | || ||||||| | | | || |||| | |||| ||| Sbjct 102491 GGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAATGA--------AGGAAGGG 102542 Query 192 CAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCT 251 ||| ||||||||||| || | |||| |||||||| || ||||| | ||| ||||| Sbjct 102543 CAACATAGTAAATTGGAGAAACTCAATGTCCCTGATGAGTTCTCTGGGTGTGTCCAATCA 102602 Query 252 GGATGCTGTGTGGAGATCTGA 272 || |||| || || || ||| Sbjct 102603 GGCTGCTATGCAGAAATTTGA 102623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918126766816