Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq22586 149 5e-31 seq29212 122 7e-23 >seq22586 Length=877411 Score = 149 bits (164), Expect = 5e-31 Identities = 539/838 (64%), Gaps = 8/838 (1%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || || ||||| | ||||| |||||| |||| || Sbjct 444359 ATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGATCTGTCTTCCGAT 444300 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| | | | || ||| || || ||||||| || || | || Sbjct 444299 CTTCGTCACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAGTCACGTTCTCGCC 444240 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || || ||||| || || || || ||| |||||| | | || ||| | | ||| Sbjct 444239 TTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAG 444180 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || | || ||||||||| ||| || || ||||| || || || || ||| ||||| Sbjct 444179 GTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTATCGAAAATATCCAC 444120 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || |||||||||||| | || |||| || ||||| | || | ||| | || Sbjct 444119 TCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAAGAACCGT 444060 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | ||| |||||||||||| | ||| ||| ||||| || ||||| | || Sbjct 444059 CTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGAAA 444000 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| | | | | || || | ||||| || | || ||||| || ||| Sbjct 443999 TGGATCGACGGCGGA---GAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAG 443943 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | |||||| ||| || || || |||||||| || || | || | ||| Sbjct 443942 GGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATG 443883 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 ||||| | || ||| || ||||| || ||||| || || || | || |||||||| Sbjct 443882 CCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTC 443823 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 ||| ||||| | | | | || ||| || | || || || || ||| | | | Sbjct 443822 GCTTGCTTGCTGTACTCTCTC-CTCCGGTCAAAGCTGAGT--GAAGAACGCGTGAGAGGG 443766 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 || || | || ||||| || || ||| || | || ||| ||||| | | Sbjct 443765 ATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGTATGCGATGCTCTGCCCTGCGCG 443706 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 | | || ||||| | | ||||| ||||| || || || || || || || || Sbjct 443705 TTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTG 443646 Query 61816 TTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 |||| | || ||||| | | ||| || || | ||||||||||||| ||||| Sbjct 443645 TTGGGAGCGTTAGGGTACGGA-AAGATGTACAACGTGGTCAACCCATTTGATTGGATGGA 443587 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 |||| ||| || | || || || ||||| ||||||||| | || || || |||||| Sbjct 443586 ACTGATATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAA 443529 Score = 149 bits (164), Expect = 5e-31 Identities = 539/838 (64%), Gaps = 8/838 (1%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || || ||||| | ||||| |||||| |||| || Sbjct 447494 ATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGATCTGTCTTCCGAT 447435 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| | | | || ||| || || ||||||| || || | || Sbjct 447434 CTTCGTCACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAGTCACGTTCTCGCC 447375 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || || ||||| || || || || ||| |||||| | | || ||| | | ||| Sbjct 447374 TTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAG 447315 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || | || ||||||||| ||| || || ||||| || || || || ||| ||||| Sbjct 447314 GTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTATCGAAAATATCCAC 447255 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || |||||||||||| | || |||| || ||||| | || | ||| | || Sbjct 447254 TCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAAGAACCGT 447195 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | ||| |||||||||||| | ||| ||| ||||| || ||||| | || Sbjct 447194 CTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGAAA 447135 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| | | | | || || | ||||| || | || ||||| || ||| Sbjct 447134 TGGATCGACGGCGGA---GAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAG 447078 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | |||||| ||| || || || |||||||| || || | || | ||| Sbjct 447077 GGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATG 447018 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 ||||| | || ||| || ||||| || ||||| || || || | || |||||||| Sbjct 447017 CCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTC 446958 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 ||| ||||| | | | | || ||| || | || || || || ||| | | | Sbjct 446957 GCTTGCTTGCTGTACTCTCTC-CTCCGGTCAAAGCTGAGT--GAAGAACGCGTGAGAGGG 446901 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 || || | || ||||| || || ||| || | || ||| ||||| | | Sbjct 446900 ATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGTATGCGATGCTCTGCCCTGCGCG 446841 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 | | || ||||| | | ||||| ||||| || || || || || || || || Sbjct 446840 TTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTG 446781 Query 61816 TTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 |||| | || ||||| | | ||| || || | ||||||||||||| ||||| Sbjct 446780 TTGGGAGCGTTAGGGTACGGA-AAGATGTACAACGTGGTCAACCCATTTGATTGGATGGA 446722 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 |||| ||| || | || || || ||||| ||||||||| | || || || |||||| Sbjct 446721 ACTGATATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAA 446664 >seq29212 Length=358297 Score = 122 bits (134), Expect = 7e-23 Identities = 481/750 (64%), Gaps = 14/750 (2%) Strand=Plus/Plus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 |||| || ||||| | ||||| | || ||||| ||||| || || || ||||| Sbjct 222772 GAACGCCACTTCATCAGTCATGTCCTTGCCTTCTTCGCCGCATCCGATGGCATCGTTCTA 222831 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 || ||| | | || ||| | | ||||| ||| | ||||||||||| || || Sbjct 222832 GAAAATCTCGCTGTTCGCTTCATGAAAGAGGTCCAAATCGCGGAGGCGCGTGCATTTTAT 222891 Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365 || ||||| || ||||| |||||| ||||||| |||||||| ||| | ||| |||| || Sbjct 222892 GGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACT 222951 Query 61366 TACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCG 61425 || || | || | ||| | || | ||| | || | || ||| | ||| Sbjct 222952 TATATTAAAGATTCCACCGAAAAAAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGC 223011 Query 61426 GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTG 61483 ||| ||||| |||||||| || || |||||| || |||| | | |||| Sbjct 223012 GTGGCTAAAAAAGCCGATTGGGCTTTGAAATGGATC-----GACGGCGGCGAAGCTTTTG 223066 Query 61484 GTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCG 61543 ||||| || | || || || || || || |||||||| || || | Sbjct 223067 CCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTG 223126 Query 61544 CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA 61603 | || |||||||| || || || || | ||||| || | || ||| || ||||||| Sbjct 223127 CGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTGA 223186 Query 61604 TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGG 61663 | || || || || || | ||||| || |||||| ||||| | | | | || | Sbjct 223187 TCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTGCTGTACTCTCTC-CTCCAG 223245 Query 61664 TGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAAC 61723 | || | || || ||||| ||| | || || | || ||||| ||| || Sbjct 223246 TCAAAGCTAAGT--GAAGAGCGCGTGAAGGGAATAGTGAGGGATGCGGTGGATATAGAGA 223303 Query 61724 AGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGT 61783 ||| ||| | |||||| | ||| | | | | || ||||| ||| | ||| Sbjct 223304 GGGAGTTTGTATGCGACGCTCTTCCCTGCGCGTTAGTTGGGATGAACGGTGAGTTGATGA 223363 Query 61784 CGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTT-GGGTATGAAGC-GGAT 61841 || || ||||| || ||||| || || |||| | | ||| ||||||| || || Sbjct 223364 GTCAATACATTGAGTTCGTTGCGGATCGGTTGTTAGGAGCTTTAGGGTATG--GCAAAAT 223421 Query 61842 CTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAA 61901 || ||| || ||||| ||||||| ||||| | ||||| || | || || || || Sbjct 223422 GTACAATGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGCAAGGGAAAACCAA 223481 Query 61902 TTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| |||||||| | || || || ||||| Sbjct 223482 TTTCTTCGAGAAGAGAGTTGGAGAGTATCA 223511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397423845694640