Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05]
9,148 sequences; 2,189,140,010 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq9148 87.8 2e-15
seq9147 87.8 2e-15
seq88 87.8 2e-15
seq26 87.8 2e-15
seq21 87.8 2e-15
seq20 87.8 2e-15
seq15 87.8 2e-15
seq14 87.8 2e-15
seq17 84.2 2e-14
seq4 84.2 2e-14
seq9 80.6 3e-13
seq986 78.8 9e-13
seq3 78.8 9e-13
seq22 75.2 1e-11
>seq9148
Length=160301
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 111353 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 111412
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 111413 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 111458
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 137744 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 137685
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 137684 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 137639
>seq9147
Length=668584
Score = 87.8 bits (96), Expect = 2e-15
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 188208 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 188267
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||| || |||| |||||||||||| |||| || ||
Sbjct 188268 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 188305
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 201170 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 201111
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 201110 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 201065
Score = 87.8 bits (96), Expect = 2e-15
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 642496 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 642555
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||| || |||| |||||||||||| |||| || ||
Sbjct 642556 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 642593
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 655458 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 655399
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 655398 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 655353
>seq88
Length=878102
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 424686 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 424627
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 424626 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 424581
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 558592 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 558651
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 558652 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 558697
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 584982 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 584923
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 584922 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 584877
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 718839 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 718898
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 718899 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 718944
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 745242 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 745183
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 745182 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 745137
>seq26
Length=23272750
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||| | ||||||||||| |||||||||| ||||||||| ||
Sbjct 20811418 GGTCGCAGTGACCAGGTCCGAGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCGT 20811477
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 20811478 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 20811523
>seq21
Length=47987235
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 40214152 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 40214093
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 40214092 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 40214047
>seq20
Length=65574513
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 51235201 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 51235142
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 51235141 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 51235096
>seq15
Length=91555666
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 20828472 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 20828531
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 20828532 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 20828577
Score = 87.8 bits (96), Expect = 2e-15
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 20841435 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 20841376
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||| || |||| |||||||||||| |||| || ||
Sbjct 20841375 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 20841338
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 85521510 GGTCGCAGTGACCAGGCCCGAGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 85521451
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 85521450 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 85521405
>seq14
Length=44799946
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 35968654 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 35968595
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 35968594 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 35968549
>seq17
Length=39386523
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || ||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 38477568 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 38477627
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 38477628 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 38477673
>seq4
Length=78750349
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 28621287 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 28621346
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| ||||||||||| ||
Sbjct 28621347 AAGACCATGTATGGGGGCTGACGCCTGCCCAATGCCGGAAGGTCAA 28621392
Score = 82.4 bits (90), Expect = 7e-14
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || ||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 11622122 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 11622181
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
||| | |||| ||| |||||||||||| ||||||||||||
Sbjct 11622182 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGT 11622224
Score = 73.4 bits (80), Expect = 4e-11
Identities = 67/85 (79%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| |||||||||| ||| ||||| || ||| | |||| ||| |||
Sbjct 31655777 GCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGATGA 31655718
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||| |||||||||||| ||
Sbjct 31655717 TGCCTGCCCAGTGCCGGAAGGTCAA 31655693
>seq9
Length=117247901
Score = 80.6 bits (88), Expect = 3e-13
Identities = 80/104 (77%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 49 TCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAA 108
||| || ||||||| ||||||||||| |||||||||| ||| ||||| || ||
Sbjct 3574619 TCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAA 3574678
Query 109 GTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 3574679 GACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 3574722
>seq986
Length=64969
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || ||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 42073 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 42132
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| | |||||||||| |||||||||||| ||
Sbjct 42133 AAGACTATGTATGGGGGCTAACGCCTGCCCAGTGCCGGAAGGTCAA 42178
>seq3
Length=37363027
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || ||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 6232761 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 6232820
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | || | ||| |||||||||||| |||||||||||| ||
Sbjct 6232821 AAGACCATGTTTGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 6232866
>seq22
Length=61129363
Score = 75.2 bits (82), Expect = 1e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || ||||||| | ||||||||| |||||||||| ||| ||||| ||
Sbjct 10618291 GGTCGTAGTGACCAGGCTCGGACAACTGTTTATCAAAAACACAGGTCTCCGCAAAGTCGT 10618232
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| | |||||||||| |||||||||||| ||
Sbjct 10618231 AAGACCATGTATGGGGGCTAACGCCTGCCCAGTGCCGGAAGGTCAA 10618186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476757745388
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