Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq9148 87.8 2e-15 seq9147 87.8 2e-15 seq88 87.8 2e-15 seq26 87.8 2e-15 seq21 87.8 2e-15 seq20 87.8 2e-15 seq15 87.8 2e-15 seq14 87.8 2e-15 seq17 84.2 2e-14 seq4 84.2 2e-14 seq9 80.6 3e-13 seq986 78.8 9e-13 seq3 78.8 9e-13 seq22 75.2 1e-11 >seq9148 Length=160301 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 111353 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 111412 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 111413 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 111458 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 137744 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 137685 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 137684 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 137639 >seq9147 Length=668584 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 188208 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 188267 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 188268 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 188305 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 201170 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 201111 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 201110 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 201065 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 642496 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 642555 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 642556 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 642593 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 655458 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 655399 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 655398 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 655353 >seq88 Length=878102 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 424686 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 424627 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 424626 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 424581 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 558592 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 558651 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 558652 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 558697 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 584982 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 584923 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 584922 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 584877 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 718839 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 718898 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 718899 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 718944 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 745242 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 745183 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 745182 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 745137 >seq26 Length=23272750 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||| | ||||||||||| |||||||||| ||||||||| || Sbjct 20811418 GGTCGCAGTGACCAGGTCCGAGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCGT 20811477 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 20811478 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 20811523 >seq21 Length=47987235 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 40214152 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 40214093 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 40214092 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 40214047 >seq20 Length=65574513 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 51235201 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 51235142 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 51235141 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 51235096 >seq15 Length=91555666 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 20828472 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 20828531 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 20828532 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 20828577 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 20841435 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 20841376 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 20841375 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 20841338 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 85521510 GGTCGCAGTGACCAGGCCCGAGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 85521451 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 85521450 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 85521405 >seq14 Length=44799946 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 35968654 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 35968595 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 35968594 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 35968549 >seq17 Length=39386523 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 38477568 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 38477627 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 38477628 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 38477673 >seq4 Length=78750349 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 28621287 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 28621346 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||| || Sbjct 28621347 AAGACCATGTATGGGGGCTGACGCCTGCCCAATGCCGGAAGGTCAA 28621392 Score = 82.4 bits (90), Expect = 7e-14 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 11622122 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 11622181 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 ||| | |||| ||| |||||||||||| |||||||||||| Sbjct 11622182 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGT 11622224 Score = 73.4 bits (80), Expect = 4e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| ||| ||||| || ||| | |||| ||| ||| Sbjct 31655777 GCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGATGA 31655718 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||| |||||||||||| || Sbjct 31655717 TGCCTGCCCAGTGCCGGAAGGTCAA 31655693 >seq9 Length=117247901 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 49 TCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAA 108 ||| || ||||||| ||||||||||| |||||||||| ||| ||||| || || Sbjct 3574619 TCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAA 3574678 Query 109 GTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | | |||| ||| |||||||||||| |||||||||||| || Sbjct 3574679 GACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 3574722 >seq986 Length=64969 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 42073 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 42132 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| | |||||||||| |||||||||||| || Sbjct 42133 AAGACTATGTATGGGGGCTAACGCCTGCCCAGTGCCGGAAGGTCAA 42178 >seq3 Length=37363027 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 6232761 GGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 6232820 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | || | ||| |||||||||||| |||||||||||| || Sbjct 6232821 AAGACCATGTTTGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 6232866 >seq22 Length=61129363 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| | ||||||||| |||||||||| ||| ||||| || Sbjct 10618291 GGTCGTAGTGACCAGGCTCGGACAACTGTTTATCAAAAACACAGGTCTCCGCAAAGTCGT 10618232 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| | |||||||||| |||||||||||| || Sbjct 10618231 AAGACCATGTATGGGGGCTAACGCCTGCCCAGTGCCGGAAGGTCAA 10618186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476757745388