Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq1304 89.7 1e-15 >seq1304 Length=41235 Score = 89.7 bits (98), Expect = 1e-15 Identities = 249/379 (66%), Gaps = 6/379 (2%) Strand=Plus/Plus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 ||||||| |||| | | ||| |||||| ||| | || ||||| || || |||| Sbjct 40222 CGATCAGCCACACCTGGCTGGCGCCGGCGTTCGAGGCGGCATCGCGGATCGCGCGCCGCT 40281 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||| |||||| |||| |||||||||| | || | | || | | | || Sbjct 40282 CGACCTTGGTGGAGCCCGACGGCACGCAGATCACGATCTCCGGCCAGCGCGGGAAGCGAC 40341 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 | |||| ||||||| |||||||| || | ||||| |||| ||| || ||||| Sbjct 40342 GCTGGCCGTGGACCTTGTGGATGAAGTGCTTGATCATCTGCTCGGCCACGTCGATGTCGG 40401 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 ||||||||||||| || ||| || || || | || || || || ||| | || Sbjct 40402 CGATCACGCCGTCGCGCAGCGGCCGGATCGCCTCGATCGATCCGGGGGTCTTGCCCATCA 40461 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGG---GTCCGAA 297 | ||||||| ||| |||||| || | ||| || ||| | || | | ||| | Sbjct 40462 TCAGCTTGGCGTCGTCGCCGACCGC--CTTCACCTTCTTGA-TGCCGTCGATCGTCTCGA 40518 Query 298 TGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGT 357 | || || || || ||||| ||||| |||| || |||||| || | | ||||| Sbjct 40519 TCGCGACCACGGACGGCTCGTTCAGCACGACCCCCTTGCCGCGCAGATAGACCACGGTGT 40578 Query 358 TGGCAGTGCCCAGGTCAAT 376 | || || || || || || Sbjct 40579 TCGCGGTTCCGAGATCGAT 40597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1353476172672