Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05]
9,148 sequences; 2,189,140,010 total letters
Query= AAMG01001690.1
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
seq1304 89.7 1e-15
>seq1304
Length=41235
Score = 89.7 bits (98), Expect = 1e-15
Identities = 249/379 (66%), Gaps = 6/379 (2%)
Strand=Plus/Plus
Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60
||||||| |||| | | ||| |||||| ||| | || ||||| || || ||||
Sbjct 40222 CGATCAGCCACACCTGGCTGGCGCCGGCGTTCGAGGCGGCATCGCGGATCGCGCGCCGCT 40281
Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120
| |||| |||||| |||| |||||||||| | || | | || | | | ||
Sbjct 40282 CGACCTTGGTGGAGCCCGACGGCACGCAGATCACGATCTCCGGCCAGCGCGGGAAGCGAC 40341
Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180
| |||| ||||||| |||||||| || | ||||| |||| ||| || |||||
Sbjct 40342 GCTGGCCGTGGACCTTGTGGATGAAGTGCTTGATCATCTGCTCGGCCACGTCGATGTCGG 40401
Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240
||||||||||||| || ||| || || || | || || || || ||| | ||
Sbjct 40402 CGATCACGCCGTCGCGCAGCGGCCGGATCGCCTCGATCGATCCGGGGGTCTTGCCCATCA 40461
Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGG---GTCCGAA 297
| ||||||| ||| |||||| || | ||| || ||| | || | | ||| |
Sbjct 40462 TCAGCTTGGCGTCGTCGCCGACCGC--CTTCACCTTCTTGA-TGCCGTCGATCGTCTCGA 40518
Query 298 TGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGT 357
| || || || || ||||| ||||| |||| || |||||| || | | |||||
Sbjct 40519 TCGCGACCACGGACGGCTCGTTCAGCACGACCCCCTTGCCGCGCAGATAGACCACGGTGT 40578
Query 358 TGGCAGTGCCCAGGTCAAT 376
| || || || || || ||
Sbjct 40579 TCGCGGTTCCGAGATCGAT 40597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1353476172672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |