Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq12 102 1e-19 seq15 96.9 6e-18 seq24 93.3 8e-17 seq20 87.8 3e-15 >seq12 Length=102570143 Score = 102 bits (112), Expect = 1e-19 Identities = 187/270 (69%), Gaps = 17/270 (6%) Strand=Plus/Plus Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAG 65 || || ||| | || || ||| |||| ||| |||| ||||| |||| ||||| |||| Sbjct 92171818 TGCCCGAGGTCGTGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAG 92171874 Query 66 TCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTT 125 | |||| ||| ||||||||||| || | ||||| | || |||||| Sbjct 92171875 TTGAACCCAGCGGTTCGGGTCGGAGCATGTGGGATCTCGCTTGGAGGGCGGGTTTTGGTT 92171934 Query 126 ACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAA 183 || ||||||| |||||||| | || ||||||| | | | || |||| | Sbjct 92171935 ACGGGGTCGGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAAT--------GA 92171986 Query 184 AGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTT-TCTGGATTT 242 |||| |||||||||||||||||| || | ||| |||||||| ||| ||||| ||| Sbjct 92171987 AGGAAGGGCAAAATAGTAAATTGGAGAAACTCACTGTCCCTGATGAGTTTCTCTGGGTTT 92172046 Query 243 GTGCAATCTGGATGCTGTGTGGAGATCTGA 272 || ||||| || |||| || ||| || ||| Sbjct 92172047 GTCCAATCAGGCTGCTATGCGGAAATTTGA 92172076 >seq15 Length=91555666 Score = 96.9 bits (106), Expect = 6e-18 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAAC 179 |||||||||||||||| |||||||| | || ||||| || | | | || | | Sbjct 60756835 TTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC--- 60756779 Query 180 AAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGA 239 ||||| ||||||| | |||||||| || || |||| |||||||| |||||||| Sbjct 60756778 ---AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTGCCTGATGAGTTTTCTGGG 60756722 Query 240 TTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272 ||||| || || || |||| |||||| |||||| Sbjct 60756721 TTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 60756689 >seq24 Length=55877068 Score = 93.3 bits (102), Expect = 8e-17 Identities = 112/153 (73%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAAC 179 |||||||||||||||| |||||||| | || ||||| || | | | || | | Sbjct 38744726 TTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC--- 38744670 Query 180 AAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGA 239 ||||| ||||||| | |||||||| || || |||| || ||||| |||||||| Sbjct 38744669 ---AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTGCCCGATGAGTTTTCTGGG 38744613 Query 240 TTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272 ||||| || || || |||| |||||| |||||| Sbjct 38744612 TTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 38744580 >seq20 Length=65574513 Score = 87.8 bits (96), Expect = 3e-15 Identities = 179/261 (69%), Gaps = 24/261 (9%) Strand=Plus/Plus Query 21 TGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAGTCCGACCCGAAT 77 || || ||| |||| ||| |||| ||||| |||| ||||| ||||| ||| Sbjct 37097616 TGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAGTTGAGCCCAGCG 37097672 Query 78 GTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTG---ATG-GGACCTTGGTTACCGGGTC 133 ||| ||||||||||| || ||||| | || | | || |||||||| ||||| Sbjct 37097673 GTTCGGGTCGGAGCATGTGG----GATCTCGCTGGGAAGGCGGGTTTTGGTTACGGGGTC 37097728 Query 134 GGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAAAGGATGGG 191 || |||||||| | || ||||||| | | | || |||| | |||| ||| Sbjct 37097729 GGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAATGA--------AGGAAGGG 37097780 Query 192 CAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCT 251 ||| ||||||||||| || | ||||| |||||||| || ||||| | ||| ||||| Sbjct 37097781 CAACATAGTAAATTGGAGAAACTCGATGTCCCTGATGAGTTCTCTGGGTGTGTCCAATCA 37097840 Query 252 GGATGCTGTGTGGAGATCTGA 272 || |||| || || || ||| Sbjct 37097841 GGCTGCTATGCAGAAATTTGA 37097861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918315984768