Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05]
9,148 sequences; 2,189,140,010 total letters
Query= AAMG01001756.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq12 102 1e-19
seq15 96.9 6e-18
seq24 93.3 8e-17
seq20 87.8 3e-15
>seq12
Length=102570143
Score = 102 bits (112), Expect = 1e-19
Identities = 187/270 (69%), Gaps = 17/270 (6%)
Strand=Plus/Plus
Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAG 65
|| || ||| | || || ||| |||| ||| |||| ||||| |||| ||||| ||||
Sbjct 92171818 TGCCCGAGGTCGTGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAG 92171874
Query 66 TCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTT 125
| |||| ||| ||||||||||| || | ||||| | || ||||||
Sbjct 92171875 TTGAACCCAGCGGTTCGGGTCGGAGCATGTGGGATCTCGCTTGGAGGGCGGGTTTTGGTT 92171934
Query 126 ACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAA 183
|| ||||||| |||||||| | || ||||||| | | | || |||| |
Sbjct 92171935 ACGGGGTCGGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAAT--------GA 92171986
Query 184 AGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTT-TCTGGATTT 242
|||| |||||||||||||||||| || | ||| |||||||| ||| ||||| |||
Sbjct 92171987 AGGAAGGGCAAAATAGTAAATTGGAGAAACTCACTGTCCCTGATGAGTTTCTCTGGGTTT 92172046
Query 243 GTGCAATCTGGATGCTGTGTGGAGATCTGA 272
|| ||||| || |||| || ||| || |||
Sbjct 92172047 GTCCAATCAGGCTGCTATGCGGAAATTTGA 92172076
>seq15
Length=91555666
Score = 96.9 bits (106), Expect = 6e-18
Identities = 113/153 (74%), Gaps = 6/153 (4%)
Strand=Plus/Minus
Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAAC 179
|||||||||||||||| |||||||| | || ||||| || | | | || | |
Sbjct 60756835 TTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC--- 60756779
Query 180 AAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGA 239
||||| ||||||| | |||||||| || || |||| |||||||| ||||||||
Sbjct 60756778 ---AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTGCCTGATGAGTTTTCTGGG 60756722
Query 240 TTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272
||||| || || || |||| |||||| ||||||
Sbjct 60756721 TTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 60756689
>seq24
Length=55877068
Score = 93.3 bits (102), Expect = 8e-17
Identities = 112/153 (73%), Gaps = 6/153 (4%)
Strand=Plus/Minus
Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAAC 179
|||||||||||||||| |||||||| | || ||||| || | | | || | |
Sbjct 38744726 TTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC--- 38744670
Query 180 AAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGA 239
||||| ||||||| | |||||||| || || |||| || ||||| ||||||||
Sbjct 38744669 ---AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTGCCCGATGAGTTTTCTGGG 38744613
Query 240 TTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272
||||| || || || |||| |||||| ||||||
Sbjct 38744612 TTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 38744580
>seq20
Length=65574513
Score = 87.8 bits (96), Expect = 3e-15
Identities = 179/261 (69%), Gaps = 24/261 (9%)
Strand=Plus/Plus
Query 21 TGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAGTCCGACCCGAAT 77
|| || ||| |||| ||| |||| ||||| |||| ||||| ||||| |||
Sbjct 37097616 TGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAGTTGAGCCCAGCG 37097672
Query 78 GTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTG---ATG-GGACCTTGGTTACCGGGTC 133
||| ||||||||||| || ||||| | || | | || |||||||| |||||
Sbjct 37097673 GTTCGGGTCGGAGCATGTGG----GATCTCGCTGGGAAGGCGGGTTTTGGTTACGGGGTC 37097728
Query 134 GGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAAAGGATGGG 191
|| |||||||| | || ||||||| | | | || |||| | |||| |||
Sbjct 37097729 GGGGTATCAAGGTGGACCTCATGGGTATTACATGGTGGAAATGA--------AGGAAGGG 37097780
Query 192 CAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCT 251
||| ||||||||||| || | ||||| |||||||| || ||||| | ||| |||||
Sbjct 37097781 CAACATAGTAAATTGGAGAAACTCGATGTCCCTGATGAGTTCTCTGGGTGTGTCCAATCA 37097840
Query 252 GGATGCTGTGTGGAGATCTGA 272
|| |||| || || || |||
Sbjct 37097841 GGCTGCTATGCAGAAATTTGA 37097861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918315984768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |