Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq3131 77.0 5e-12 >seq3131 Length=9068 Score = 77.0 bits (84), Expect = 5e-12 Identities = 112/157 (71%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 133 ACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTT 192 |||||| ||| || || || || |||| ||||| || |||||||| ||||| ||||| Sbjct 6668 ACTCGCG-CATCCGCTTCTTGCCCTCCTTCTGCTTGTCGAGCAGCTTCCGCTTGCGGCTG 6726 Query 193 ACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGC 252 |||| ||||| ||||||||||| |||| ||| | | ||| || | ||| Sbjct 6727 GCGTCGCCGCCATAGCATTTGGCGGTCACGTCCTTGCGCATCGCCGCGATCGTCTCGCGC 6786 Query 253 GCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGA 289 || || | || ||||| || || |||||||||| || Sbjct 6787 GCGATCACCTTGCCGCCGATCGCCGCCTGGATCGGGA 6823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838323303168