Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq564 93.3 9e-17 >seq564 Length=137050 Score = 93.3 bits (102), Expect = 9e-17 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 243 CCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGC 302 |||||| |||||| |||||||||||||| ||||| || ||||| ||||| ||||||| Sbjct 74701 CCTCCAGCACCCATGTGTCCTTGGTTCCGCCGCCCTGGCTGGAGTTCACGACGAGCGAGC 74760 Query 303 CTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGA-- 360 | || ||||||||||| || || | || ||||| | | | ||| | |||| Sbjct 74761 CCTCTTTCAGCGCCACCCGCGTGAGCCCGCCGGG---AATGATCTTCACCTGGTCCGAGA 74817 Query 361 -GAGCACGAAGGGTCGCAAGTCG 382 |||||||||||| |||| |||| Sbjct 74818 CGAGCACGAAGGGGCGCAGGTCG 74840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119897542400