Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq22 143 2e-29 seq19 102 6e-17 >seq22 Length=61129363 Score = 143 bits (158), Expect = 2e-29 Identities = 538/838 (64%), Gaps = 8/838 (1%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || || ||||| | ||||| |||||| |||| ||| Sbjct 6288120 ATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGATCTGTCTTCAGAT 6288061 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| | | | || ||| || || ||||||| || || | || Sbjct 6288060 CTTCGTCACTGGGAAACTCTCACCGCCGATGAGCATCACTTCATTAGTCACGTTCTCGCC 6288001 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || || ||||| || || || || ||| |||||| | | || ||| | | ||| Sbjct 6288000 TTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAG 6287941 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || | || ||||||||| ||| || || ||||| || || || || ||| ||||| Sbjct 6287940 GTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTATCGAAAATATCCAC 6287881 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || |||||||||||| | || |||| || ||||| | || | ||| | || Sbjct 6287880 TCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAAGAACCGT 6287821 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | ||| |||||||||||| | ||| ||| ||||| || ||||| | || Sbjct 6287820 CTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGAAA 6287761 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| | | | | || || | ||||| || | || ||||| || || Sbjct 6287760 TGGATCGACGGCGGA---GAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAA 6287704 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | |||||| ||| || || || |||||||| || || | || | ||| Sbjct 6287703 GGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATG 6287644 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 ||||| | || ||| || ||||| || ||||| || || || | || || ||||| Sbjct 6287643 CCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTGCGATTTC 6287584 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 ||| ||||| | | | | || ||| || | || || ||||| ||| | | | Sbjct 6287583 GCTTGCTTGCTGTACTCTCTC-CTCCGGTCAAAGCTGAGT--GAAGAGCGCGTGAGGGGG 6287527 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 || || | || ||||| || || ||| || | || ||| | ||| | | Sbjct 6287526 ATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGTATGCGATGCTCTCCCCTGCGCG 6287467 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 | | || ||||| | | ||||| | ||| || || || || || || || ||| Sbjct 6287466 TTGGTTGGGATGAACGGCGAGTTAATGAGTCGGTACATCGAGTTCGTAGCGGATCGGCTG 6287407 Query 61816 TTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 ||| | || ||||| | | ||| || ||| | ||||||||||||| ||||| Sbjct 6287406 CTGGGAGCGTTAGGGTACGGA-AAGATGTACAATGTGGTCAACCCATTTGATTGGATGGA 6287348 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 |||| ||| || | || || || ||||| ||||||||| | || || || |||||| Sbjct 6287347 ACTGATATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGGGTTGGAGAGTATCAA 6287290 >seq19 Length=70911690 Score = 102 bits (112), Expect = 6e-17 Identities = 301/463 (65%), Gaps = 7/463 (2%) Strand=Plus/Plus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 |||| || ||||| | ||||| | || ||||| ||||| || || || ||||| Sbjct 44463426 GAACGCCACTTCATCAGTCATGTCCTTGCCTTCTTCGCCGCATCCGATGGCATCGTTCTA 44463485 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 || ||| | | || ||| | | ||||| ||| | ||||||||||| || || Sbjct 44463486 GAAAATCTCGCTGTTCGCTTCATGAAAGAGGTCCAAATCGCGGAGGCGCGTGCATTTTAT 44463545 Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365 || ||||| || ||||| |||||| ||||||| |||||||| ||| | ||| |||| || Sbjct 44463546 GGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACT 44463605 Query 61366 TACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCG 61425 || || | || | ||| | || | ||| | || | || ||| | ||| Sbjct 44463606 TATATTAAAGATTCCACCGAAAAAAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGC 44463665 Query 61426 GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTG 61483 ||| ||||| |||||||| || || |||||| || |||| | | |||| Sbjct 44463666 GTGGCTAAAAAAGCCGATTGGGCTTTGAAATGGATC-----GACGGCGGCGAAGCTTTTG 44463720 Query 61484 GTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCG 61543 ||||| || | || || || || || || |||||||| || || | Sbjct 44463721 CCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTG 44463780 Query 61544 CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA 61603 | || |||||||| || || || || | ||||| || | || ||| || ||||||| Sbjct 44463781 CGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTGA 44463840 Query 61604 TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCT 61646 | || || || || || | ||||| || |||||| ||||| Sbjct 44463841 TCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTGCT 44463883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397523674646720