Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1034 84.2 4e-14 seq2 84.2 4e-14 seq1 84.2 4e-14 >seq1034 Length=160161 Score = 84.2 bits (92), Expect = 4e-14 Identities = 209/311 (67%), Gaps = 11/311 (4%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 109995 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTC 110054 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 110055 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 110110 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 110111 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 110166 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | | Sbjct 110167 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGT 110226 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 110227 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 110286 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 110287 GCCACTCGAAC 110297 Score = 84.2 bits (92), Expect = 4e-14 Identities = 209/311 (67%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 138821 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTC 138762 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 138761 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 138706 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 138705 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 138650 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | | Sbjct 138649 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGT 138590 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 138589 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 138530 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 138529 GCCACTCGAAC 138519 >seq2 Length=62769430 Score = 84.2 bits (92), Expect = 4e-14 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 208 GATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGAGGACCGAACCGGTAA 266 |||||| ||| ||||||||||||| || |||| | |||||||||||||| | Sbjct 25341247 GATCTAGCCATGAGCAGGTTGAAGAGAGCTATAACAGGCCTTGGAGGACCGAACCCACAT 25341306 Query 267 ACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAA 326 | || | ||| | | |||||||| | || ||||||||||||||||| ||| | ||| | Sbjct 25341307 ATGTGGCAAAATATGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATA 25341366 Query 327 TAGCTCGT 334 ||||| || Sbjct 25341367 TAGCTAGT 25341374 >seq1 Length=55868233 Score = 84.2 bits (92), Expect = 4e-14 Identities = 212/313 (68%), Gaps = 16/313 (5%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 23190378 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTC 23190319 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 23190318 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 23190263 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 23190262 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 23190207 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT-AACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| ||| ||| | | Sbjct 23190206 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAC---TAA 23190150 Query 248 -TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||| |||||||| | |||||| | | ||||||| | | || |||||||||| Sbjct 23190149 GTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAA 23190090 Query 307 AGGCCAATCAAAC 319 | |||| || ||| Sbjct 23190089 ATGCCACTCGAAC 23190077 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 23359794 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 23359735 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 23359734 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 23359675 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 23359674 AACCAAGATCGGATATAGCTGGT 23359652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972789941248