Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1034 141 1e-31 seq1 140 5e-31 seq2 113 6e-23 seq11 109 8e-22 seq5 105 9e-21 seq9 100 4e-19 seq4 98.7 1e-18 seq7 87.8 2e-15 >seq1034 Length=160161 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 111352 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 111294 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 111293 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 111247 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 111246 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 111193 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 111192 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 111133 Query 246 GTA 248 ||| Sbjct 111132 GTA 111130 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 137464 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 137522 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 137523 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 137569 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 137570 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 137623 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 137624 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 137683 Query 246 GTA 248 ||| Sbjct 137684 GTA 137686 >seq1 Length=55868233 Score = 140 bits (154), Expect = 5e-31 Identities = 178/241 (74%), Gaps = 13/241 (5%) Strand=Plus/Plus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 23421069 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 23421127 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 23421128 TGTTTTTAATAAACAGTCGCTACCC-CTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 23421183 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | ||||||||||||||| ||||||||| ||||||||||| |||||| Sbjct 23421184 -------AGGAGAG-CACCCCTTCTCCCGAGGTTACGGGGTCATTTTGCCGAGTTCCTTC 23421235 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | |||| |||||| |||||| || ||||||||||||||| ||| Sbjct 23421236 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 23421295 Query 248 A 248 | Sbjct 23421296 A 23421296 Score = 109 bits (120), Expect = 8e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||| ||| |||||||||| ||||||| | |||| | Sbjct 27679928 GGCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 27679869 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 27679868 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 27679821 Score = 78.8 bits (86), Expect = 1e-12 Identities = 114/163 (70%), Gaps = 20/163 (12%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 23344796 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 23344738 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| | | Sbjct 23344737 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC-------------CCCT 23344691 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGC 168 | || | | |||||||||||||||||||||||||||| Sbjct 23344690 TTGT------GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGC 23344654 >seq2 Length=62769430 Score = 113 bits (124), Expect = 6e-23 Identities = 172/241 (71%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||| ||||||| || || | || |||||| ||||| ||| ||| | |||| Sbjct 25342786 TTCCAGCACTGGGCAGGTGTTAGACTCTACACATCGTGTTACCA-CTTAGCAGAGTCCTG 25342728 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 25342727 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCTCTTTCCTAA--TCAAAAGATA 25342670 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 | || ||| |||||||||||||| |||||| || ||||||||||| |||||| Sbjct 25342669 GG-----AG-AGT---ACCCCTTCTCCCGAGGTTACGAGGTCATTTTGCCGAGTTCCTTC 25342619 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | || | |||||| |||||| || ||||||||||||||| ||| Sbjct 25342618 GACATGGTTCTTTCAAGCGACCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 25342559 Query 248 A 248 | Sbjct 25342558 A 25342558 Score = 75.2 bits (82), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 ||||| |||||| |||||| ||||| |||||||||| ||||||| | |||| | || Sbjct 40970462 CACCCATTCTCCTAAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCG 40970403 Query 203 AACGCCTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||||| |||||| |||| ||||||||||| |||| |||| Sbjct 40970402 CGC-CCTTAGGTATTCTG-ACCTACCCACCTGTGTCAGTTTCGGGTA 40970358 >seq11 Length=62681010 Score = 109 bits (120), Expect = 8e-22 Identities = 170/243 (70%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| |||||||||| || | ||||||| | ||||| | ||| || |||| Sbjct 12373068 CCTTCCAGCACTGGGCAGGCGTTAGCCTCTATACATGGTCTTAC-GACTTTGCGGAGACC 12373126 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||| | ||| || ||||||| || Sbjct 12373127 TGTGTTTTTGGTAAACAGTCCCCCGAGTCTGGTCATTGCGACCCCCT------------- 12373173 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || || |||||||||||||||||| |||| |||||| | | ||||| Sbjct 12373174 TTGTG----AGAAG--GCGCCCCTTCTCCCGAAGTTATAGGGCTATTTTGTCAAGTTCCT 12373227 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||||||||||| |||| | Sbjct 12373228 TAGAGAGAGTTGTCTCGCGCCCCTATGTATTCTCTACCTACCCACCTGTGTCAGTTTCGG 12373287 Query 246 GTA 248 ||| Sbjct 12373288 GTA 12373290 Score = 105 bits (116), Expect = 9e-21 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| |||| ||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 57210525 GGCACCCTTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 57210466 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || || ||| ||||||||||||| |||||||||| ||||| |||| Sbjct 57210465 CGCACCCCTAGGTATTCTCTACCTACCCACCTGTGTTGGTTTCGGGTA 57210418 Score = 78.8 bits (86), Expect = 1e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||| |||||| |||||||||| ||| |||||||| | ||| ||| | |||| | Sbjct 59669347 GGCACCTCTTCTCTCGAAGTTACGAGGCTATTTTGCCAAGTTCTTTAGAGAGAGTTGTCT 59669406 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||| ||||| |||| ||||||||||| |||| Sbjct 59669407 CACGCCCCTAGGTATTCTTTACCTACCCACTTGTGTCGGTTTTGGGTA 59669454 Score = 77.0 bits (84), Expect = 5e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||| ||||||||||| ||||| ||| |||||||| | || |||| | |||| | | Sbjct 59640501 GCACCTCTTCTCCCGAAATTACGAGGCTATTTTGCCAAGTTTCTTAGAGAAAGTTGTCTC 59640560 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||| |||||||||||| |||| ||||||||||| |||| Sbjct 59640561 ACGCCCCTAGGTATTCTCTACCCACCCACTTGTGTCGGTTTTGGGTA 59640607 Score = 73.4 bits (80), Expect = 5e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 || |||| ||||| ||||||||| |||| |||||| | | |||||| | |||| | Sbjct 42323192 GGTACCCTTTCTCTCGAAGTTACAGGGCTATTTTGTCAAGTTCCTTGGAGAGAGTTGTCT 42323133 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||| |||| |||| |||| Sbjct 42323132 CGCGCCCCTAGGTATTCTCTACCTACCCACCTATGTCAGTTTTGGGTA 42323085 Score = 73.4 bits (80), Expect = 5e-11 Identities = 78/102 (76%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 || ||| |||||| |||||||||| ||| |||||||| | ||||||| | |||| | Sbjct 59587324 GGTACCTCTTCTCTCGAAGTTACGAGGCTATTTTGCCAAGTTCCTTAGAGAGAGTTGTCT 59587383 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | | ||| ||||||||||||| ||| || ||||||||| Sbjct 59587384 CACGCCCCTAGGTATTCTCTACCT-ACCCACTTTGTCGGTTT 59587424 >seq5 Length=64140413 Score = 105 bits (116), Expect = 9e-21 Identities = 172/248 (69%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||| ||||| || |||||| | ||||| | || || Sbjct 49305238 CTTAACCTTCCGGCACTGGGCAGGTGTCAGCCCTCATACATGGTCTTAC-GACTAAGCGG 49305296 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||| |||||| ||||||||||||| || || |||||||| | Sbjct 49305297 AGACCTGGGTTTTTCGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCCCTT-------- 49305348 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||| ||||||||| ||| |||||| ||| Sbjct 49305349 -----TTGTA----AGGAG--GCACCCCTTCTCCTGAAGTTACGCGGCTATTTTGTCGAG 49305397 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | | | ||| ||||||||||||| ||| ||||||| || Sbjct 49305398 TTCCTTAGAGAGAGTTGTCTCACGCCCCTAGGTATTCTCTACCTACCCATCTGTGTCAGT 49305457 Query 241 TTACGGTA 248 || |||| Sbjct 49305458 TTTGGGTA 49305465 Score = 104 bits (114), Expect = 3e-20 Identities = 174/250 (70%), Gaps = 25/250 (10%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| | ||||||| ||||| || |||||| | ||||| | ||| || Sbjct 49866346 CTTAACCTTCCAGTATTGGGCAGGTGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGA 49866404 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||| | || || |||||||| Sbjct 49866405 AGACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTGCGACC------------ 49866452 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || |||||| |||| |||||||||| |||| |||||||||| Sbjct 49866453 ------CTTTTGTGAGGAG--GCACCCTTTCTTCCGAAGTTACAGGGCTATTTTGCCGAG 49866504 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCT-TAG-TATTCTCTACCTGACCACCTGTGTCG 238 ||||||| | |||| | | | |||| ||| |||||||||||| |||||||||||| Sbjct 49866505 TTCCTTATAGATAGTTGTCTC--ATGCCTCTAGGTATTCTCTACCTATCCACCTGTGTCG 49866562 Query 239 GTTTACGGTA 248 ||| |||| Sbjct 49866563 ATTTTGGGTA 49866572 >seq9 Length=70713020 Score = 100 bits (110), Expect = 4e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| ||||||| |||||||| ||| |||||||||| ||||||| | |||| | Sbjct 18945715 GGCACCCATTCTCCCAAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAAAGTTGTCT 18945656 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || ||| ||||||||||||| |||||||||||||||| |||| Sbjct 18945655 CTCACCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 18945608 >seq4 Length=62178258 Score = 98.7 bits (108), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 25/227 (11%) Strand=Plus/Minus Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77 ||||||||||||| || ||||||| | ||||| | ||| ||| ||||||||||||| || Sbjct 11619829 GGGCAGGCGTCAGCCCCTATACATGGTCTTAC-GACTTTGCAGAGACCTGTGTTTTTGGT 11619771 Query 78 AAACAGTCGCTTCCCT--CTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCA 135 |||||||||| || | || || |||||||| || | || Sbjct 11619770 AAACAGTCGC--CCATGCCTGGTCACTGCGACC----CCTTTT------GT--------- 11619732 Query 136 GCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGT 195 | | |||||||||||| |||||||| |||| ||||| |||| ||| ||| | ||| Sbjct 11619731 GAGGAGGCACCCCTTCTTTCGAAGTTATGGGGTTATTTTACCGAGTTCTTTAGAGAGAGT 11619672 Query 196 TCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | | || | |||| ||||||| ||| | |||||||||||| ||| Sbjct 11619671 TGTCTCGCGC-CCTTGGTATTCTTTACTTACCCACCTGTGTCGATTT 11619626 >seq7 Length=60982465 Score = 87.8 bits (96), Expect = 2e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||| |||||||||||| |||||||||| |||||| | | | || | Sbjct 42174412 GGCACCCCTTCTCCTAAAGTTACGGGGCTATTTTGCCGAGTTCCTTTATGAGAATTGTCT 42174471 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| |||||| |||| |||| |||| Sbjct 42174472 CACGCCCCTAGGTATTCTCTACCTACCCACCTATGTCAGTTTCGGGTA 42174519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694393044282