Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 141 1e-31
seq1 140 5e-31
seq2 113 6e-23
seq11 109 8e-22
seq5 105 9e-21
seq9 100 4e-19
seq4 98.7 1e-18
seq7 87.8 2e-15
>seq1034
Length=160161
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 111352 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 111294
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 111293 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 111247
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 111246 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 111193
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 111192 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 111133
Query 246 GTA 248
|||
Sbjct 111132 GTA 111130
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 137464 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 137522
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 137523 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 137569
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 137570 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 137623
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 137624 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 137683
Query 246 GTA 248
|||
Sbjct 137684 GTA 137686
>seq1
Length=55868233
Score = 140 bits (154), Expect = 5e-31
Identities = 178/241 (74%), Gaps = 13/241 (5%)
Strand=Plus/Plus
Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67
||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||||
Sbjct 23421069 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 23421127
Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127
|||||||| |||||||||||| ||| || | | ||| | | | |||| | |
Sbjct 23421128 TGTTTTTAATAAACAGTCGCTACCC-CTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 23421183
Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187
|| || | ||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 23421184 -------AGGAGAG-CACCCCTTCTCCCGAGGTTACGGGGTCATTTTGCCGAGTTCCTTC 23421235
Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247
|| |||| | | | |||| |||||| |||||| || ||||||||||||||| |||
Sbjct 23421236 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 23421295
Query 248 A 248
|
Sbjct 23421296 A 23421296
Score = 109 bits (120), Expect = 8e-22
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||| ||| |||||||||| ||||||| | |||| |
Sbjct 27679928 GGCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 27679869
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 27679868 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 27679821
Score = 78.8 bits (86), Expect = 1e-12
Identities = 114/163 (70%), Gaps = 20/163 (12%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 23344796 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 23344738
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| | |
Sbjct 23344737 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC-------------CCCT 23344691
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGC 168
| || | | ||||||||||||||||||||||||||||
Sbjct 23344690 TTGT------GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGC 23344654
>seq2
Length=62769430
Score = 113 bits (124), Expect = 6e-23
Identities = 172/241 (71%), Gaps = 12/241 (5%)
Strand=Plus/Minus
Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67
||||| ||| ||||||| || || | || |||||| ||||| ||| ||| | ||||
Sbjct 25342786 TTCCAGCACTGGGCAGGTGTTAGACTCTACACATCGTGTTACCA-CTTAGCAGAGTCCTG 25342728
Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127
|||||||| |||||||||||| ||| || | | ||| | | | |||| | |
Sbjct 25342727 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCTCTTTCCTAA--TCAAAAGATA 25342670
Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187
| || ||| |||||||||||||| |||||| || ||||||||||| ||||||
Sbjct 25342669 GG-----AG-AGT---ACCCCTTCTCCCGAGGTTACGAGGTCATTTTGCCGAGTTCCTTC 25342619
Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247
|| |||| | | || | |||||| |||||| || ||||||||||||||| |||
Sbjct 25342618 GACATGGTTCTTTCAAGCGACCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 25342559
Query 248 A 248
|
Sbjct 25342558 A 25342558
Score = 75.2 bits (82), Expect = 2e-11
Identities = 83/107 (78%), Gaps = 3/107 (3%)
Strand=Plus/Minus
Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202
||||| |||||| |||||| ||||| |||||||||| ||||||| | |||| | ||
Sbjct 40970462 CACCCATTCTCCTAAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCG 40970403
Query 203 AACGCCTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| |||||| |||||| |||| ||||||||||| |||| ||||
Sbjct 40970402 CGC-CCTTAGGTATTCTG-ACCTACCCACCTGTGTCAGTTTCGGGTA 40970358
>seq11
Length=62681010
Score = 109 bits (120), Expect = 8e-22
Identities = 170/243 (70%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||| |||||||||| || | ||||||| | ||||| | ||| || ||||
Sbjct 12373068 CCTTCCAGCACTGGGCAGGCGTTAGCCTCTATACATGGTCTTAC-GACTTTGCGGAGACC 12373126
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||| | ||| || ||||||| ||
Sbjct 12373127 TGTGTTTTTGGTAAACAGTCCCCCGAGTCTGGTCATTGCGACCCCCT------------- 12373173
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || || |||||||||||||||||| |||| |||||| | | |||||
Sbjct 12373174 TTGTG----AGAAG--GCGCCCCTTCTCCCGAAGTTATAGGGCTATTTTGTCAAGTTCCT 12373227
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| ||||||||||| |||| |
Sbjct 12373228 TAGAGAGAGTTGTCTCGCGCCCCTATGTATTCTCTACCTACCCACCTGTGTCAGTTTCGG 12373287
Query 246 GTA 248
|||
Sbjct 12373288 GTA 12373290
Score = 105 bits (116), Expect = 9e-21
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||| |||| ||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 57210525 GGCACCCTTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 57210466
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| || ||| ||||||||||||| |||||||||| ||||| ||||
Sbjct 57210465 CGCACCCCTAGGTATTCTCTACCTACCCACCTGTGTTGGTTTCGGGTA 57210418
Score = 78.8 bits (86), Expect = 1e-12
Identities = 82/108 (76%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||| |||||| |||||||||| ||| |||||||| | ||| ||| | |||| |
Sbjct 59669347 GGCACCTCTTCTCTCGAAGTTACGAGGCTATTTTGCCAAGTTCTTTAGAGAGAGTTGTCT 59669406
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||||| ||||| |||| ||||||||||| ||||
Sbjct 59669407 CACGCCCCTAGGTATTCTTTACCTACCCACTTGTGTCGGTTTTGGGTA 59669454
Score = 77.0 bits (84), Expect = 5e-12
Identities = 81/107 (76%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
||||| ||||||||||| ||||| ||| |||||||| | || |||| | |||| | |
Sbjct 59640501 GCACCTCTTCTCCCGAAATTACGAGGCTATTTTGCCAAGTTTCTTAGAGAAAGTTGTCTC 59640560
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| ||| |||||||||||| |||| ||||||||||| ||||
Sbjct 59640561 ACGCCCCTAGGTATTCTCTACCCACCCACTTGTGTCGGTTTTGGGTA 59640607
Score = 73.4 bits (80), Expect = 5e-11
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|| |||| ||||| ||||||||| |||| |||||| | | |||||| | |||| |
Sbjct 42323192 GGTACCCTTTCTCTCGAAGTTACAGGGCTATTTTGTCAAGTTCCTTGGAGAGAGTTGTCT 42323133
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||| |||| |||| ||||
Sbjct 42323132 CGCGCCCCTAGGTATTCTCTACCTACCCACCTATGTCAGTTTTGGGTA 42323085
Score = 73.4 bits (80), Expect = 5e-11
Identities = 78/102 (76%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|| ||| |||||| |||||||||| ||| |||||||| | ||||||| | |||| |
Sbjct 59587324 GGTACCTCTTCTCTCGAAGTTACGAGGCTATTTTGCCAAGTTCCTTAGAGAGAGTTGTCT 59587383
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| | ||| ||||||||||||| ||| || |||||||||
Sbjct 59587384 CACGCCCCTAGGTATTCTCTACCT-ACCCACTTTGTCGGTTT 59587424
>seq5
Length=64140413
Score = 105 bits (116), Expect = 9e-21
Identities = 172/248 (69%), Gaps = 20/248 (8%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||| ||||| || |||||| | ||||| | || ||
Sbjct 49305238 CTTAACCTTCCGGCACTGGGCAGGTGTCAGCCCTCATACATGGTCTTAC-GACTAAGCGG 49305296
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
|||||| |||||| ||||||||||||| || || |||||||| |
Sbjct 49305297 AGACCTGGGTTTTTCGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCCCTT-------- 49305348
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| || || || ||||||||||||| ||||||||| ||| |||||| |||
Sbjct 49305349 -----TTGTA----AGGAG--GCACCCCTTCTCCTGAAGTTACGCGGCTATTTTGTCGAG 49305397
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | |||| | | | ||| ||||||||||||| ||| ||||||| ||
Sbjct 49305398 TTCCTTAGAGAGAGTTGTCTCACGCCCCTAGGTATTCTCTACCTACCCATCTGTGTCAGT 49305457
Query 241 TTACGGTA 248
|| ||||
Sbjct 49305458 TTTGGGTA 49305465
Score = 104 bits (114), Expect = 3e-20
Identities = 174/250 (70%), Gaps = 25/250 (10%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| ||||||| | ||||||| ||||| || |||||| | ||||| | ||| ||
Sbjct 49866346 CTTAACCTTCCAGTATTGGGCAGGTGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGA 49866404
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||||| | || || ||||||||
Sbjct 49866405 AGACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTGCGACC------------ 49866452
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| || || || |||||| |||| |||||||||| |||| ||||||||||
Sbjct 49866453 ------CTTTTGTGAGGAG--GCACCCTTTCTTCCGAAGTTACAGGGCTATTTTGCCGAG 49866504
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCT-TAG-TATTCTCTACCTGACCACCTGTGTCG 238
||||||| | |||| | | | |||| ||| |||||||||||| ||||||||||||
Sbjct 49866505 TTCCTTATAGATAGTTGTCTC--ATGCCTCTAGGTATTCTCTACCTATCCACCTGTGTCG 49866562
Query 239 GTTTACGGTA 248
||| ||||
Sbjct 49866563 ATTTTGGGTA 49866572
>seq9
Length=70713020
Score = 100 bits (110), Expect = 4e-19
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||| ||||||| |||||||| ||| |||||||||| ||||||| | |||| |
Sbjct 18945715 GGCACCCATTCTCCCAAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAAAGTTGTCT 18945656
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| || ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 18945655 CTCACCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 18945608
>seq4
Length=62178258
Score = 98.7 bits (108), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 25/227 (11%)
Strand=Plus/Minus
Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77
||||||||||||| || ||||||| | ||||| | ||| ||| ||||||||||||| ||
Sbjct 11619829 GGGCAGGCGTCAGCCCCTATACATGGTCTTAC-GACTTTGCAGAGACCTGTGTTTTTGGT 11619771
Query 78 AAACAGTCGCTTCCCT--CTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCA 135
|||||||||| || | || || |||||||| || | ||
Sbjct 11619770 AAACAGTCGC--CCATGCCTGGTCACTGCGACC----CCTTTT------GT--------- 11619732
Query 136 GCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGT 195
| | |||||||||||| |||||||| |||| ||||| |||| ||| ||| | |||
Sbjct 11619731 GAGGAGGCACCCCTTCTTTCGAAGTTATGGGGTTATTTTACCGAGTTCTTTAGAGAGAGT 11619672
Query 196 TCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| | || | |||| ||||||| ||| | |||||||||||| |||
Sbjct 11619671 TGTCTCGCGC-CCTTGGTATTCTTTACTTACCCACCTGTGTCGATTT 11619626
>seq7
Length=60982465
Score = 87.8 bits (96), Expect = 2e-15
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||| |||||||||||| |||||||||| |||||| | | | || |
Sbjct 42174412 GGCACCCCTTCTCCTAAAGTTACGGGGCTATTTTGCCGAGTTCCTTTATGAGAATTGTCT 42174471
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||||||||||| |||||| |||| |||| ||||
Sbjct 42174472 CACGCCCCTAGGTATTCTCTACCTACCCACCTATGTCAGTTTCGGGTA 42174519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694393044282
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