Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 93.3 4e-17
seq5 89.7 5e-16
seq11 87.8 2e-15
seq1 75.2 1e-11
>seq1034
Length=160161
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 111191 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 111248
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 111249 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 111298
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 137625 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 137568
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 137567 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 137518
>seq5
Length=64140413
Score = 89.7 bits (98), Expect = 5e-16
Identities = 86/110 (78%), Gaps = 3/110 (3%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | |||||||||||||| | ||||||| ||| | || ||| |
Sbjct 49866511 TAAGGAACTCGGCAAAATAGCCCTGTAACTTCGGAAGAAAGGGTGCCTCCTCACAAAAG- 49866453
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
|| ||||| || ||| || || |||||||| |||||||||||| ||
Sbjct 49866452 --GGTCGCAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCT 49866405
>seq11
Length=62681010
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||| | ||||||| ||| | || ||| ||
Sbjct 57210479 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGAAGAAAGGGTGCCTCCTCACAAAGGG 57210538
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| | | ||| || ||| || ||||||||||| |||||||||||| ||
Sbjct 57210539 G--GTCACAGTGACCAGGCCCGAGCAACTGTTTAGCAAAAACACAGGTCT 57210586
Score = 75.2 bits (82), Expect = 1e-11
Identities = 83/110 (75%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
|||| |||| | |||| | |||||||||||||||| || || | ||| | || ||| |
Sbjct 19425070 TAAGAAACTCGACAAAATAGCCCTGTAACTTCGGGAGAAGGGATGCCTCCTCATAAA--G 19425127
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || | ||| || |||| || || | |||||| |||||||||||| ||
Sbjct 19425128 GGGGTCACAGTGATTAGGCCCGGGTGATTGTTTACCAAAAACACAGGTCT 19425177
>seq1
Length=55868233
Score = 75.2 bits (82), Expect = 1e-11
Identities = 71/90 (79%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 100 CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTC 159
||| |||||||||||| || |||| ||| | || ||| ||| | ||||| || ||| |
Sbjct 23344655 CCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGG--GTCGCAGTGACCAGGCC 23344712
Query 160 CAGGCAACTGTTTAACAAAAACACAGGGCT 189
| ||| |||||||| |||||||||||| ||
Sbjct 23344713 CGGGCGACTGTTTACCAAAAACACAGGTCT 23344742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531194679036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |