Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq1034 93.3 4e-17 seq5 89.7 5e-16 seq11 87.8 2e-15 seq1 75.2 1e-11 >seq1034 Length=160161 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 111191 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 111248 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 111249 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 111298 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 137625 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 137568 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 137567 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 137518 >seq5 Length=64140413 Score = 89.7 bits (98), Expect = 5e-16 Identities = 86/110 (78%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | |||||||||||||| | ||||||| ||| | || ||| | Sbjct 49866511 TAAGGAACTCGGCAAAATAGCCCTGTAACTTCGGAAGAAAGGGTGCCTCCTCACAAAAG- 49866453 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||||| || ||| || || |||||||| |||||||||||| || Sbjct 49866452 --GGTCGCAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCT 49866405 >seq11 Length=62681010 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||| | ||||||| ||| | || ||| || Sbjct 57210479 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGAAGAAAGGGTGCCTCCTCACAAAGGG 57210538 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | | ||| || ||| || ||||||||||| |||||||||||| || Sbjct 57210539 G--GTCACAGTGACCAGGCCCGAGCAACTGTTTAGCAAAAACACAGGTCT 57210586 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 |||| |||| | |||| | |||||||||||||||| || || | ||| | || ||| | Sbjct 19425070 TAAGAAACTCGACAAAATAGCCCTGTAACTTCGGGAGAAGGGATGCCTCCTCATAAA--G 19425127 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || | ||| || |||| || || | |||||| |||||||||||| || Sbjct 19425128 GGGGTCACAGTGATTAGGCCCGGGTGATTGTTTACCAAAAACACAGGTCT 19425177 >seq1 Length=55868233 Score = 75.2 bits (82), Expect = 1e-11 Identities = 71/90 (79%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 100 CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTC 159 ||| |||||||||||| || |||| ||| | || ||| ||| | ||||| || ||| | Sbjct 23344655 CCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGG--GTCGCAGTGACCAGGCC 23344712 Query 160 CAGGCAACTGTTTAACAAAAACACAGGGCT 189 | ||| |||||||| |||||||||||| || Sbjct 23344713 CGGGCGACTGTTTACCAAAAACACAGGTCT 23344742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531194679036