Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 183 6e-44
seq1 178 3e-42
seq2 145 1e-32
seq9 140 6e-31
seq4 131 3e-28
seq10 127 4e-27
seq7 120 6e-25
seq5 120 6e-25
seq12 98.7 2e-18
seq11 93.3 8e-17
seq6 89.7 1e-15
>seq1034
Length=160161
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 111731 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 111790
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 111791 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 111849
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 111850 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 111909
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 111910 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 111959
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 137085 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 137026
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 137025 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 136967
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 136966 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 136907
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 136906 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 136857
>seq1
Length=55868233
Score = 178 bits (196), Expect = 3e-42
Identities = 179/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 23408681 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 23408740
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 23408741 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 23408799
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 23408800 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 23408859
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| || || ||||||
Sbjct 23408860 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTGACTCTAGGGATA 23408909
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 23420711 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 23420652
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 23420651 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 23420597
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 23420596 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 23420537
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 23420536 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 23420486
Score = 93.3 bits (102), Expect = 8e-17
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | ||||| | |||| | || || ||||| ||||||
Sbjct 36045729 AGTGCAAAGGCAGAAGGGAGCTTGACAAGAAGACCCACCCGTTGAGTAGGGATGAAAGTT 36045670
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| ||||||| |||||| || ||||| ||| ||||||| | |||||| |||
Sbjct 36045669 GGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCTGTCGCTCAATAATTAAAAGTTACT 36045610
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 36045609 CTAGGGATA 36045601
Score = 89.7 bits (98), Expect = 1e-15
Identities = 98/129 (76%), Gaps = 1/129 (1%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | |||| | | | |||| | |||||| | |||||||| ||
Sbjct 4627670 AGTGCAAAGGCAGAAGGGAGCTTGA-TTCAAGACCCACCTGTCTAGTAAGGACGAAAATC 4627612
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
| ||| ||||||| |||| || || || || |||||||| |||||||||| ||
Sbjct 4627611 AGCTTTAGTGATCCGATTGTGCCGAGTGAAAGGGTCGTCGCTCAACGGATAAAAATTATT 4627552
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 4627551 CTAGGGATA 4627543
>seq2
Length=62769430
Score = 145 bits (160), Expect = 1e-32
Identities = 174/231 (75%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||| ||| |||| | || ||| ||||||| |||| ||||| ||||| ||||
Sbjct 1547332 GGGATAGTCTCAGGTAGACAATTTCCATGGGGCGTAGGCCTTCCAAAAGGTAACAAAGGC 1547273
Query 171 GCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228
| ||||| | |||| ||| ||| ||| | || | | |||| |||||||||||||
Sbjct 1547272 GTGCAAAGGTTTCCTCGAGCC-GGACGGAGATTG-GCCCTCGAGTGTAAAGGCAAAAGGG 1547215
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||
Sbjct 1547214 AGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACG 1547155
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||| || ||||| || ||||||||| |||||||| ||| || ||||||
Sbjct 1547154 GTGCCGAGTGGAAGGGTTGTCGCTCGATAGATAAAAGTTACTCTAGGGATA 1547104
Score = 114 bits (126), Expect = 3e-23
Identities = 143/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAAC---CAT 204
|||||||||| ||||| || ||| ||||| | ||||| ||| ||| | | |
Sbjct 25239294 GCCTCCCAAAAGGTAACAGAAGCGTGCAAAGGTTTCCTCATGCCGGACGGAGATTGGCCT 25239353
Query 205 GCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACG 264
|| |||||||||| | ||||| |||||||| | | |||| | ||| | |||||||
Sbjct 25239354 TCG---AGTGCAAAGGAAGAAGGGAGTTTGACTACAAGACCCACCCGTCAAACAGGGACA 25239410
Query 265 AAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324
||||||| ||| ||||||| | ||| || ||||| || |||||||| ||||||||||
Sbjct 25239411 AAAGTCGACTTTAGTGATCCGACAATGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAA 25239470
Query 325 GCTACCCTGGGGATA 339
| | | || ||||||
Sbjct 25239471 GTTGCTCTAGGGATA 25239485
Score = 105 bits (116), Expect = 1e-20
Identities = 165/232 (71%), Gaps = 7/232 (3%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||| |||| ||| |||||||
Sbjct 40970901 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTGTCAAAAGGTAGCGGAGGC 40970960
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227
||||| | |||| | | |||| || | || || | |||||||||| | ||||
Sbjct 40970961 ATGCAAAGGTTTCCTCGGGT-GGATAGAGAT--TG-GCCCTTGAGTGCAAAGGAAGAAGG 40971016
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | |||| | ||| | ||||||||||||| |||| |||||||
Sbjct 40971017 GAGCTTGACTGCAAGACCCACCCGTCGAACAGGGACGAAAGTTAACCTTAGTGATCCGAT 40971076
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||| | ||||| || ||||||| || ||||||| ||| || || |||
Sbjct 40971077 AGTGCCAAGTGGAAGGGACGTCGCTTAACAAATAAAAGTTACTCTAGGTATA 40971128
Score = 102 bits (112), Expect = 2e-19
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
|||||||||| |||||||||| | ||||| | | | | |||||| | ||
Sbjct 1819745 GCCTCCCAAAAGGTAACGGAGGTGTGCAAAGGTTTCTTTGGGCCAGATGGAGATTG-GCC 1819687
Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266
| | | |||||||| | ||||| | |||||||| | |||| | | || |||||||||
Sbjct 1819686 CTCGAATGCAAAGGTAGAAGGGAGCTTGACTGCAAGACCCACCCGCTGAGTAGGGACGAA 1819627
Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326
||||| |||| ||||||| | |||| || ||||| || ||||||| ||| ||| |||
Sbjct 1819626 AGTCGACCTTAGTGATCCGACAGTGCCGAGTGGAAGGGTAGTCGCTCAACGAATACAAGT 1819567
Query 327 TACCCTGGGGATA 339
||| || ||||||
Sbjct 1819566 TACTCTAGGGATA 1819554
Score = 73.4 bits (80), Expect = 8e-11
Identities = 67/85 (79%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314
|||| ||||||||||||| |||| |||||| ||||||| | || || | |||| |||
Sbjct 62556156 AGCAAGGACGAAAGTCGGCCTTAGTGATCCAACGGTGCTAAGTGAAAGGATCGTCACTCA 62556215
Query 315 ACGGATAAAAGCTACCCTGGGGATA 339
|| |||||||| || || ||||||
Sbjct 62556216 ACAGATAAAAGTTATTCTAGGGATA 62556240
>seq9
Length=70713020
Score = 140 bits (154), Expect = 6e-31
Identities = 172/233 (74%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||| | | || | |||||| ||||||| ||||||||| ||||| ||||
Sbjct 18946209 GGGACAATCTTAGATAGACAGTTTCTATGGGGCGTAACCCTCCCAAAAGGTAACAGAGGT 18946268
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAA----CCATGCGCACAGTGCAAAGGCAAAAG 226
| |||| | |||| | ||| ||| | |||| || | |||||||||| |||
Sbjct 18946269 GTGTAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCAT-CG---ATTGCAAAGGCAGAAG 18946324
Query 227 GGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGG 286
|| | |||||||| | |||| | ||| |||||||||||||||||| |||| |||||||
Sbjct 18946325 GGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGA 18946384
Query 287 CGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||||||| ||||| ||| || |||| ||||||||||| ||| || |||||
Sbjct 18946385 TGGTGCTGAGTGGAAAGGCTGTTGCTCAACGGATAAAAGTTACTCTAAGGATA 18946437
Score = 91.5 bits (100), Expect = 3e-16
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | || ||| ||||| | |||||||||| |||||||||||
Sbjct 57238649 GGGACAGTCTCAGGTAGACAATTTTTATGGGGTGTAGGCCTCCCAAAAGGTAACGGAGGC 57238590
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
||||| | ||| | || ||| | | | ||| ||| |||||| | || ||
Sbjct 57238589 ATACAAAGGTTTCCTTGTGTCAGACGGAGATTA-ACCCACGAGTTCAAAGGTAGAAAGGA 57238531
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||| ||| | |||| | ||| || ||||| ||||||||| |||| ||||||| ||
Sbjct 57238530 GCTTGATTGCAAGACCCACCCGTCGAGTAGGGATGAAAGTCGGCCTTAGTGATCCGAAGG 57238471
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323
||| | ||||| || | || ||| || |||||
Sbjct 57238470 TGCCAAGTGGAAAGGTCCTCACTCAACAAATAAA 57238437
>seq4
Length=62178258
Score = 131 bits (144), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
||||||| ||| | |||||| ||||||| ||| |||||| ||||| ||||||
Sbjct 11620208 GGACAGTCTCAAGTAGACAGTTTCTATGGGGCGTAGGCCCCCCAAAAGGTAACAGAGGCG 11620267
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATG-CGCAC-AGTGCAAAGGCAAAAGGGT 229
||||||| |||| | || ||| || | | | |||||||||||| |||||
Sbjct 11620268 TGCAAAGATTTCCTCGGGCCAGAC--AAAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGA 11620325
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | ||| | || |||||||||||||||| | |||| ||||| | |||
Sbjct 11620326 GCTTGACTGCAAGCCCCACCCATCGAGCAGGGACGAAAGTCAGCCTTAGTGATCTGACGG 11620385
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | || ||||| || |||||||| || |||||||| ||| || ||||||
Sbjct 11620386 TACCGAGTGGAAGGGTCGTCGCTCAACAGATAAAAGTTACTCTAGGGATA 11620435
Score = 98.7 bits (108), Expect = 2e-18
Identities = 132/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 160 GTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAA 218
|||| | ||||| |||| | |||||| ||| ||||| | || | | ||||||||
Sbjct 223292 GTAATGAAGGCGTGCAAAAGTTTCCTCAGGCAGGACGGAAATTA-GCCCTCGAGTGCAAA 223350
Query 219 GGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAA 278
|| ||||||| | |||||||| | |||| | ||| |||| | ||||||||||| ||||
Sbjct 223351 GGTAAAAGGGAGCTTGACTGCAAGACCCACCTGTCAAGCAAGAACGAAAGTCGGCCTTAG 223410
Query 279 TGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338
|||| || | ||| || ||||| || | || |||||| |||| ||| || |||||
Sbjct 223411 TGATTCGACAGTGTCGAGTGGAAAGGTTATTATTCAACGGATTAAAGTTACTCTAGGGAT 223470
Query 339 A 339
|
Sbjct 223471 A 223471
Score = 82.4 bits (90), Expect = 1e-13
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291
|||||||| | |||| | ||| |||||||||||||||||| |||| | ||||| ||||
Sbjct 32381124 TTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTAATCCGATGGTG 32381065
Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329
| || || || || | || ||| || |||||||| |||
Sbjct 32381064 CCGAGTGAAAGGGTCATCACTCAACAGATAAAAGTTAC 32381027
>seq10
Length=62175169
Score = 127 bits (140), Expect = 4e-27
Identities = 153/205 (75%), Gaps = 6/205 (3%)
Strand=Plus/Plus
Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197
||||||| |||||||||| |||||||||||| ||||| | ||| || ||| ||
Sbjct 47976335 TGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTTAGGCCGGACGG 47976394
Query 198 AAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCT 254
| | || || | |||| ||||||| || || | |||||||| | | || | |||
Sbjct 47976395 AGAT--TG-GCCCTTGAGTGTAAAGGCAGAAAGGAGCTTGACTGCAATATCCACCCGTCG 47976451
Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314
|||||||||||||||||| |||| |||||| |||| | ||||| |||||||||||
Sbjct 47976452 AGCAGGGACGAAAGTCGGTCTTAGTGATCCAACGGTATCAAGTGGAAGGGCCGTCGCTCA 47976511
Query 315 ACGGATAAAAGCTACCCTGGGGATA 339
| ||||||||| ||| | ||||||
Sbjct 47976512 ATGGATAAAAGTTACTTTAGGGATA 47976536
>seq7
Length=60982465
Score = 120 bits (132), Expect = 6e-25
Identities = 145/194 (75%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATG-C 206
|||||||||| |||| ||||||| |||| | |||||| | ||||||| | ||| |
Sbjct 42173887 GCCTCCCAAAAGGTAATGGAGGCGTGTAAAGGTTTCCTCAGGTCGGATGGAGA--ATGGC 42173830
Query 207 GCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265
| | |||||||||||| ||||| | |||| ||| | |||| | ||| |||||||| ||
Sbjct 42173829 CCTCGAGTGCAAAGGCAGAAGGGAGCTTGATTGCAAAACCCACCCGTCGAGCAGGGATGA 42173770
Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
|||| || |||| ||||||| ||| || ||||| || |||| ||| | ||||||
Sbjct 42173769 AAGTTGGCCTTAGTGATCCGATAGTGTCGAGTGGAAGGGTCGTCACTCAAAATATAAAAT 42173710
Query 326 CTACCCTGGGGATA 339
||| || ||||||
Sbjct 42173709 TTACTCTAGGGATA 42173696
Score = 77.0 bits (84), Expect = 6e-12
Identities = 138/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
||||||||||| ||||||| || | ||||| | |||| | | || ||| | | ||
Sbjct 20143702 GCCTCCCAAAG-GTAACGGGGGTGTGCAAAGGTTTCCTCGGGCTAGACGGAGATTA-GCC 20143759
Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC-CTCAAGTCTAGCAGGGACGA 265
| | ||||||||||||||| || | |||| ||| | ||| || | || || | ||| |
Sbjct 20143760 CTCGAGTGCAAAGGCAAAATGGAGCTTGATTGCAAGACCTATCGA-TCGAGAAAGGA-AA 20143817
Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
|| | | |||| ||||||| | ||| |||||| || | | |||| | |||||||||
Sbjct 20143818 AACTTGACCTTAGTGATCCGACAGTGTCAAATGGATGGGTCTTTGCTCAATGGATAAAAG 20143877
Query 326 CTACCCTGGGGATA 339
||| | ||||||
Sbjct 20143878 TTACTTTAGGGATA 20143891
>seq5
Length=64140413
Score = 120 bits (132), Expect = 6e-25
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
||||||| | || | ||||| | ||||| ||||| |||| ||||||||| ||
Sbjct 49865973 GGACAGTCTTAGGTAGATAGTTTCTATAGGGCGTAGGCCTCTCAAAAGGTAACGGAGACG 49865914
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC--AGTGCAAAGGCAAAAGGGT 229
||||| | ||| | || ||| | || ||| |||| ||||||| |||||
Sbjct 49865913 TGCAAAGGTTTCCTTGGGCCAGACGGAGAT--TGGGCATTGAGTGTAAAGGCAGAAGGGA 49865856
Query 230 GTTTGACTGCGACACCC-TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
| |||| ||| | |||| || | || |||| |||||||||| || |||| ||||||| ||
Sbjct 49865855 GCTTGATTGCAAGACCCATCCA-TCGAGCAAGGACGAAAGTTGGCCTTAGTGATCCGACG 49865797
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||| | ||||| || ||||| |||||||||||||| ||| || ||||||
Sbjct 49865796 GTGCCAAGTGGAAGGGTCGTCGTTCGACGGATAAAAGTTACTCTAGGGATA 49865746
>seq12
Length=35429946
Score = 98.7 bits (108), Expect = 2e-18
Identities = 141/194 (73%), Gaps = 5/194 (3%)
Strand=Plus/Plus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGC 206
|||||||||| |||| |||||| ||||| | |||| |||| ||| || | ||
Sbjct 31138979 GCCTCCCAAAAGGTAATGGAGGCATGCAAAGGTTTCCTCGAGCT-GGACAGAGAT--TGG 31139035
Query 207 GCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265
| | |||||||||||| ||||| |||||| | | | || | ||| |||||||| ||
Sbjct 31139036 CCTCGAGTGCAAAGGCAGAAGGGACCTTGACTACAAGATCCACTCGTCGAGCAGGGATGA 31139095
Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
|||| | ||| ||||| | ||||| ||| || || | | || ||| |||||||||||
Sbjct 31139096 AAGTTGACCTTCGTGATCAGACGGTGTTGAGTGCAAGAGTCATCACTCAACGGATAAAAG 31139155
Query 326 CTACCCTGGGGATA 339
||| || ||||||
Sbjct 31139156 TTACTCTAGGGATA 31139169
>seq11
Length=62681010
Score = 93.3 bits (102), Expect = 8e-17
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | |||| ||| | | || | ||| ||||||| |||||||
Sbjct 42323727 AGTGCAAAGGCAGAAGGGAGCTTGATTGCAAGAACCACTCGTCAAGCAGGGGAGAAAGTC 42323786
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
| |||| ||||| | | |||| || |||| || |||| || ||||||||||| |||
Sbjct 42323787 AGCCTTAGTGATCTGACAGTGCCGAGTGGATGGGTCGTCACTGAACGGATAAAAGTTACT 42323846
Query 331 CTGGGGATA 339
| ||||||
Sbjct 42323847 TTAGGGATA 42323855
>seq6
Length=51074515
Score = 89.7 bits (98), Expect = 1e-15
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||| | | | ||| | |||| ||| | | | | || || |||||||||||||
Sbjct 8062641 AGTGCAAAAGTAGATGGGAGCTTGATTGCAAGAACAACCCATCGAGTAGGGACGAAAGTC 8062582
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
| |||||||| ||| ||||| || ||||| || |||| || ||||||||||| |||
Sbjct 8062581 AGCTTTAATGATTCGGTGGTGCCGAGTGGAAGGGTCGTCTTTCAACGGATAAAAGTTACT 8062522
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 8062521 CTAGGGATA 8062513
Score = 82.4 bits (90), Expect = 1e-13
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 215 CAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGC 274
|||||||| |||| | ||| |||| | |||| | || || ||||||||||||| |
Sbjct 19644215 CAAAGGCAGAAGGAAGCTTGGCTGCAAGACCCACCCGTTGAGTAGGGACGAAAGTCAACC 19644156
Query 275 TTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGG 334
||||| |||| | |||| || ||||| ||| || |||| || |||||||| | | ||
Sbjct 19644155 TTAATTATCCAACAGTGCCGAGTGGAAGGGCTGTAGCTCAACAGATAAAAGTTGCTCTAA 19644096
Query 335 GGATA 339
|||||
Sbjct 19644095 GGATA 19644091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982389841984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |