Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1034 113 5e-23 seq1 107 2e-21 seq2 84.2 2e-14 seq5 78.8 1e-12 seq10 77.0 4e-12 seq11 73.4 4e-11 >seq1034 Length=160161 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 111571 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 111512 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 111511 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 111453 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 111452 ACAAGGAATTTCGCTACCTTAGGACCGTTA 111423 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 137245 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 137304 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 137305 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 137363 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 137364 ACAAGGAATTTCGCTACCTTAGGACCGTTA 137393 >seq1 Length=55868233 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 23420856 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 23420915 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 23420916 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 23420975 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 23420976 GACAAGGAATTTCGCTACCTTAGGACAGTTA 23421006 >seq2 Length=62769430 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 25342909 TACACCATTCGTGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACCTTAGGACAGTT 25342850 Query 173 A 173 | Sbjct 25342849 A 25342849 Score = 82.4 bits (90), Expect = 8e-14 Identities = 108/150 (72%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||| ||||||| || | |||||||| || | | ||||||||||| Sbjct 40970742 GGGTCTTTCTATCCAGGTGCGGGTAGTCCGTATCTTCACAGACATGTCTATTTCACTGAG 40970683 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | | |||||| ||| || ||| ||| |||| |||||||||| Sbjct 40970682 C-CTCTCTCTCAGACAGTGCCCAGATCATTACGCCTTTCATGCGAGTCG-AACTTACCCG 40970625 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||| |||||||||||||||||| |||| Sbjct 40970624 ACAAGGTATTTCGCTACCTTAGGACTGTTA 40970595 >seq5 Length=64140413 Score = 78.8 bits (86), Expect = 1e-12 Identities = 106/149 (71%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85 ||||||| |||| | |||||| || |||||||||| || | | ||||||| ||| Sbjct 15961027 GGTCTTTCTGTCCAAGTACGGGTAGTCTGCATCTTCACAGACATTTTTATTTCACCAAGC 15960968 Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | ||||| | ||| | |||||| |||| |||||||||||| Sbjct 15960967 -CTCTCTCCGAGACTGTGCCCAGATTGTTACGACTGTCGTGCGGGTCAGAACTTACCCGA 15960909 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||| ||||||||||||||||| Sbjct 15960908 CAAGGAATTTTACTACCTTAGGACCGTTA 15960880 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| || |||| ||| |||||||||||||| |||||| ||||||||||||||||| Sbjct 49866220 TACACCTTTTGTGCGACTCGAAACTTACCCGACAAAGAATTTTGCTACCTTAGGACCGTT 49866279 Query 173 A 173 | Sbjct 49866280 A 49866280 >seq10 Length=62175169 Score = 77.0 bits (84), Expect = 4e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| |||| |||||||||| |||| |||||||||||||||||||| |||| Sbjct 53681155 CCTTTCGTGCGGGTCAGAACTTACCCAACAAAGAATTTCGCTACCTTAGGACGGTTA 53681099 >seq11 Length=62681010 Score = 73.4 bits (80), Expect = 4e-11 Identities = 104/148 (70%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 27 GTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCT 86 |||||| |||| ||||||| || | |||||||| || | | ||||||| |||| Sbjct 12372851 GTCTTTCTGTCCAGGTGCGGGTAGTCCGTATCTTCACAGACATGTCTATTTCACCGAGC- 12372909 Query 87 CACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGAC 145 | | | ||||||| || || |||||| ||| |||||||||||| Sbjct 12372910 CTCTCTCCGAGACAGTGCCCAGATCGTTATGCCTTTCGTGTGAGTCAGAACTTACCCGAT 12372969 Query 146 AAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||| ||||||| |||||||| Sbjct 12372970 AAGGAATTTCGTTACCTTATGACCGTTA 12372997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194518766