Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 113 5e-23
seq1 107 2e-21
seq2 84.2 2e-14
seq5 78.8 1e-12
seq10 77.0 4e-12
seq11 73.4 4e-11
>seq1034
Length=160161
Score = 113 bits (124), Expect = 5e-23
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | ||||||| |||
Sbjct 111571 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 111512
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 111511 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 111453
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 111452 ACAAGGAATTTCGCTACCTTAGGACCGTTA 111423
Score = 113 bits (124), Expect = 5e-23
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| ||||||| || |||||||||| || | | ||||||| |||
Sbjct 137245 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 137304
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 137305 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 137363
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 137364 ACAAGGAATTTCGCTACCTTAGGACCGTTA 137393
>seq1
Length=55868233
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 23420856 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 23420915
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 23420916 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 23420975
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 23420976 GACAAGGAATTTCGCTACCTTAGGACAGTTA 23421006
>seq2
Length=62769430
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 25342909 TACACCATTCGTGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACCTTAGGACAGTT 25342850
Query 173 A 173
|
Sbjct 25342849 A 25342849
Score = 82.4 bits (90), Expect = 8e-14
Identities = 108/150 (72%), Gaps = 3/150 (2%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| ||| ||||||| || | |||||||| || | | |||||||||||
Sbjct 40970742 GGGTCTTTCTATCCAGGTGCGGGTAGTCCGTATCTTCACAGACATGTCTATTTCACTGAG 40970683
Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | | |||||| ||| || ||| ||| |||| ||||||||||
Sbjct 40970682 C-CTCTCTCTCAGACAGTGCCCAGATCATTACGCCTTTCATGCGAGTCG-AACTTACCCG 40970625
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||| |||||||||||||||||| ||||
Sbjct 40970624 ACAAGGTATTTCGCTACCTTAGGACTGTTA 40970595
>seq5
Length=64140413
Score = 78.8 bits (86), Expect = 1e-12
Identities = 106/149 (71%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85
||||||| |||| | |||||| || |||||||||| || | | ||||||| |||
Sbjct 15961027 GGTCTTTCTGTCCAAGTACGGGTAGTCTGCATCTTCACAGACATTTTTATTTCACCAAGC 15960968
Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
| | | ||||| | ||| | |||||| |||| ||||||||||||
Sbjct 15960967 -CTCTCTCCGAGACTGTGCCCAGATTGTTACGACTGTCGTGCGGGTCAGAACTTACCCGA 15960909
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||| |||||||||||||||||
Sbjct 15960908 CAAGGAATTTTACTACCTTAGGACCGTTA 15960880
Score = 75.2 bits (82), Expect = 1e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||| || |||| ||| |||||||||||||| |||||| |||||||||||||||||
Sbjct 49866220 TACACCTTTTGTGCGACTCGAAACTTACCCGACAAAGAATTTTGCTACCTTAGGACCGTT 49866279
Query 173 A 173
|
Sbjct 49866280 A 49866280
>seq10
Length=62175169
Score = 77.0 bits (84), Expect = 4e-12
Identities = 51/57 (89%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| ||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||
Sbjct 53681155 CCTTTCGTGCGGGTCAGAACTTACCCAACAAAGAATTTCGCTACCTTAGGACGGTTA 53681099
>seq11
Length=62681010
Score = 73.4 bits (80), Expect = 4e-11
Identities = 104/148 (70%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 27 GTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCT 86
|||||| |||| ||||||| || | |||||||| || | | ||||||| ||||
Sbjct 12372851 GTCTTTCTGTCCAGGTGCGGGTAGTCCGTATCTTCACAGACATGTCTATTTCACCGAGC- 12372909
Query 87 CACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGAC 145
| | | ||||||| || || |||||| ||| ||||||||||||
Sbjct 12372910 CTCTCTCCGAGACAGTGCCCAGATCGTTATGCCTTTCGTGTGAGTCAGAACTTACCCGAT 12372969
Query 146 AAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||| ||||||| ||||||||
Sbjct 12372970 AAGGAATTTCGTTACCTTATGACCGTTA 12372997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547194518766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |