Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq9 75.2 7e-12
seq1 75.2 7e-12
seq10 71.6 8e-11
seq8 71.6 8e-11
>seq9
Length=70713020
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 43572733 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 43572676
Query 122 GCT 124
|||
Sbjct 43572675 GCT 43572673
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 43676432 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 43676375
Query 122 GCT 124
|||
Sbjct 43676374 GCT 43676372
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | |||||||| || |||||||||||||||||||||| | |||||| |
Sbjct 43512567 TTCAATCGGTAGGA-GCGACGGGTGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 43512510
Query 122 GCT 124
|||
Sbjct 43512509 GCT 43512507
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | |||||| |||| |||||||||||||||||||||| | |||||| |
Sbjct 43690946 TTCAATCGGTAGGA-GCGACGAGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 43690889
Query 122 GCT 124
|||
Sbjct 43690888 GCT 43690886
>seq1
Length=55868233
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55516728 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55516785
Query 122 GCT 124
|||
Sbjct 55516786 GCT 55516788
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55526186 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55526243
Query 122 GCT 124
|||
Sbjct 55526244 GCT 55526246
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55557463 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55557520
Query 122 GCT 124
|||
Sbjct 55557521 GCT 55557523
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55570092 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55570149
Query 122 GCT 124
|||
Sbjct 55570150 GCT 55570152
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55579552 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55579609
Query 122 GCT 124
|||
Sbjct 55579610 GCT 55579612
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55588957 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55589014
Query 122 GCT 124
|||
Sbjct 55589015 GCT 55589017
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55608769 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55608826
Query 122 GCT 124
|||
Sbjct 55608827 GCT 55608829
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55618254 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55618311
Query 122 GCT 124
|||
Sbjct 55618312 GCT 55618314
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55627745 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55627802
Query 122 GCT 124
|||
Sbjct 55627803 GCT 55627805
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55640832 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55640889
Query 122 GCT 124
|||
Sbjct 55640890 GCT 55640892
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55650257 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55650314
Query 122 GCT 124
|||
Sbjct 55650315 GCT 55650317
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55672097 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55672154
Query 122 GCT 124
|||
Sbjct 55672155 GCT 55672157
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55681421 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55681478
Query 122 GCT 124
|||
Sbjct 55681479 GCT 55681481
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55690918 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55690975
Query 122 GCT 124
|||
Sbjct 55690976 GCT 55690978
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55699756 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55699813
Query 122 GCT 124
|||
Sbjct 55699814 GCT 55699816
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55716292 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55716349
Query 122 GCT 124
|||
Sbjct 55716350 GCT 55716352
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55731923 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55731980
Query 122 GCT 124
|||
Sbjct 55731981 GCT 55731983
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55752650 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55752707
Query 122 GCT 124
|||
Sbjct 55752708 GCT 55752710
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55761846 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55761903
Query 122 GCT 124
|||
Sbjct 55761904 GCT 55761906
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55791833 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55791890
Query 122 GCT 124
|||
Sbjct 55791891 GCT 55791893
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55801333 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55801390
Query 122 GCT 124
|||
Sbjct 55801391 GCT 55801393
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55810476 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55810533
Query 122 GCT 124
|||
Sbjct 55810534 GCT 55810536
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55819890 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55819947
Query 122 GCT 124
|||
Sbjct 55819948 GCT 55819950
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55829686 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55829743
Query 122 GCT 124
|||
Sbjct 55829744 GCT 55829746
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 55838592 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 55838649
Query 122 GCT 124
|||
Sbjct 55838650 GCT 55838652
Score = 73.4 bits (80), Expect = 2e-11
Identities = 55/62 (89%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 63 TCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122
||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| ||
Sbjct 55535485 TCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGAG 55535542
Query 123 CT 124
||
Sbjct 55535543 CT 55535544
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | ||||| |
Sbjct 55708046 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGAGA 55708103
Query 122 GCT 124
|||
Sbjct 55708104 GCT 55708106
>seq10
Length=62175169
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| || |||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 6692586 TTCAATCCGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 6692643
Query 122 GCT 124
|||
Sbjct 6692644 GCT 6692646
>seq8
Length=57128820
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||| ||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 20978803 TTCAATCGATAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 20978746
Query 122 GCT 124
|||
Sbjct 20978745 GCT 20978743
Score = 71.6 bits (78), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||| | ||||| |||||||||||||||| | ||||||||
Sbjct 20987288 TTCAATCGGTAGGA-GCGACGGGCAGTGTGTATAAAGGGCAGGGACGTAGT-CAACGCAA 20987231
Query 122 GCT 124
|||
Sbjct 20987230 GCT 20987228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300797084120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |