Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 8e-17 seq5 91.5 3e-16 >seq13 Length=58321163 Score = 93.3 bits (102), Expect = 8e-17 Identities = 112/153 (73%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAAC 179 |||||||||||||||| |||||||| | || ||||| || | | | || | | Sbjct 15288610 TTGGTTACCGGGTCGGAGTATCAAGGTGGACCGCATGGATTTTACATGGTGGAAGTC--- 15288666 Query 180 AAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGA 239 ||||| ||||||| | |||||||| || || |||| || ||||| |||||||| Sbjct 15288667 ---AAGGAAGGGCAAATTGGTAAATTGGAGAAAATCAATGTGCCCGATGAGTTTTCTGGG 15288723 Query 240 TTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272 ||||| || || || |||| |||||| |||||| Sbjct 15288724 TTTGTCCAGTCAGGCTGCTTTGTGGAAATCTGA 15288756 >seq5 Length=64140413 Score = 91.5 bits (100), Expect = 3e-16 Identities = 176/257 (68%), Gaps = 16/257 (6%) Strand=Plus/Plus Query 21 TGTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAGTCCGACCCGAAT 77 || || ||| |||| ||| |||| ||||| |||| ||||| ||||| ||| Sbjct 39380095 TGCGTGGGGATGGGGAAAGATGGGAAATTGGTGAA---TTGGGCAGAGTTGAGCCCAGCG 39380151 Query 78 GTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACCGGGTCGGTT 137 ||| ||||||||||| || | ||||| | || |||||||| ||||||| Sbjct 39380152 GTTCGGGTCGGAGCATGTGGGATCTCGCTTGGAGGGCGGGTTTTGGTTACGGGGTCGGGG 39380211 Query 138 TATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAAAGGATGGGCAAA 195 |||||||| | || ||||||| | | | || |||| | |||| |||||| Sbjct 39380212 TATCAAGGTGGACCTCATGGGTATTACATGGTGGAAATGA--------AGGAAGGGCAAC 39380263 Query 196 ATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCTGGAT 255 ||||||||||| || | |||| |||||||| || ||||| ||||| ||||| || | Sbjct 39380264 ATAGTAAATTGGAGAAACTCAATGTCCCTGATGAGTTCTCTGGGTTTGTCCAATCAGGCT 39380323 Query 256 GCTGTGTGGAGATCTGA 272 ||| || || || ||| Sbjct 39380324 GCTATGCAGAAATTTGA 39380340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918390503744