Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 122 7e-26
seq13 114 1e-23
seq1 113 4e-23
seq5 111 1e-22
seq7 104 2e-20
seq8 98.7 8e-19
seq6 87.8 1e-15
seq12 80.6 2e-13
>seq1034
Length=160161
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 106844 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 106785
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 106784 GATCGCGACCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 106725
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 106724 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 106685
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 141972 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 142031
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 142032 GATCGCGACCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 142091
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 142092 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 142131
>seq13
Length=58321163
Score = 114 bits (126), Expect = 1e-23
Identities = 122/160 (76%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 52725987 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 52725929
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 52725928 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 52725869
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||| | ||| | ||||
Sbjct 52725868 GCGGACTTGACGTCATCCCCACCTTCGTGAGGTATATCAC 52725829
>seq1
Length=55868233
Score = 113 bits (124), Expect = 4e-23
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 38278197 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 38278256
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| || |||| |||| |||||||| |||
Sbjct 38278257 GATCGCGACCCTTTGTCCCGTCCATTGTAGCACATGTGTCGCCCAGGGCATAAGGGGCAT 38278316
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 38278317 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 38278356
Score = 87.8 bits (96), Expect = 1e-15
Identities = 121/163 (74%), Gaps = 10/163 (6%)
Strand=Plus/Minus
Query 4 AGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
|||| ||| |||||||| | ||| | ||| |||| | | ||||||||||||||||||
Sbjct 25204385 AGTTACAGCCTACAATCTGAACTGAGGATGGGCTTTTAGAG-TTAGCTCCCCCTCGCGGG 25204327
Query 63 TTGGCGGCCCTCTGT---ATGTACCATTGTATGACGTGTGAAGCCCTACC-CATAAGGGC 118
| | | |||| ||| || || ||||| || |||| | ||| ||||||||
Sbjct 25204326 ATCGTGACCCTTTGTTCCATATA---TTGTAGCACATGTGTC-CTCTAGTTCATAAGGGG 25204271
Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||||| ||||||| ||||||| |||||||||||| || ||||
Sbjct 25204270 CATGATGACTTGATGTCATCCTCACCTTCCTCCGACTTATCAC 25204228
>seq5
Length=64140413
Score = 111 bits (122), Expect = 1e-22
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95
||| ||| ||||||| |||||||||| | ||| |||| ||| |||||||| |||
Sbjct 54224242 TTTTTGGAGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGTCCATTGTAGCACG 54224183
Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155
|||| |||| |||||||| ||||| ||||||||||||||| ||||||||||||| |
Sbjct 54224182 TGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCT 54224123
Query 156 TGTCAC 161
| ||||
Sbjct 54224122 TATCAC 54224117
Score = 86.0 bits (94), Expect = 5e-15
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95
||| ||| ||||||| |||||||| | | ||| |||| ||| |||||||| | |
Sbjct 49189864 TTTTTGGAGTTAGCTCACCCTCGCGAGATCGCGACCCTTTGTCCCGTCCATTGTAGCATG 49189805
Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155
|||| ||| |||||||| ||||| ||||||||||||||| |||||| ||||| ||
Sbjct 49189804 TGTGTCGCCTAGTGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTTCTCCGCTT 49189745
Score = 80.6 bits (88), Expect = 2e-13
Identities = 113/159 (71%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
||||||||| || ||||| | ||| | ||| ||| |||||| |||| || |
Sbjct 8967855 GAGTTGCAGCCTGCAATCTGAACTGAGGACGGGTTTTTGGAGTTAGCTTACCCTTACGAG 8967796
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| | | |||| ||| | |||||| | ||||| ||| | |||||||| ||||
Sbjct 8967795 ATCGTGACCCTTTGTCCCGTCTATTGTAGCATGTGTGTCTCCCAAGGCATAAGGGGCATG 8967736
Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| ||||||||||||||| ||||||||| ||| || ||||
Sbjct 8967735 ATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 8967697
>seq7
Length=60982465
Score = 104 bits (114), Expect = 2e-20
Identities = 121/161 (75%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60
||||||| || ||||||| || ||| | ||| || | || ||||||| ||||||||
Sbjct 51680989 CGAGTTGTAGCCTACAATTCGAACTGAGG-ACAGGTTTTTAGAGTTAGCTCACCCTCGCG 51680931
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
|| | || |||| ||| |||||||| ||||||| ||| | ||||| || ||
Sbjct 51680930 GGATTACGACCCTTTGTCCCGTCCATTGTAGCACGTGTGTTGCCTAAGGCATAAAGGGCA 51680871
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||| ||||||||||||||| |||||||||| || || ||||
Sbjct 51680870 TGATGACTTGACGTCATCCTCACCTTCCTCTGGCTTATCAC 51680830
Score = 80.6 bits (88), Expect = 2e-13
Identities = 65/79 (82%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| |||| || || | | |||||||| ||||| ||||||||||||||| ||
Sbjct 19363458 CCATTGTAGCACGTTTGTCGCTCAAGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 19363517
Query 143 CCTTCCTCCGGTTTGTCAC 161
||||||||||| || ||||
Sbjct 19363518 CCTTCCTCCGGCTTATCAC 19363536
>seq8
Length=57128820
Score = 98.7 bits (108), Expect = 8e-19
Identities = 120/161 (75%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||| || ||||| ||| | ||| ||| | | ||||||| |||||||
Sbjct 26402241 CGAGTTGCAGCCTGTAATCCAAACTGAGGATGGGTTTTTAGAG-TTAGCTCACCCTCGCA 26402183
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | || |||| |||| |||||||| ||||||| |||| ||||||||||
Sbjct 26402182 AGATCGCAACCCTTTGTACCGTCCATTGTAGCACGTGTGTCGCCCAGGGTATAAGGGCCA 26402123
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||| ||||||||||||||| |||||||||||| || ||||
Sbjct 26402122 TGATGACTTGACGTCATCCTCACCTTCCTCCGACTTATCAC 26402082
>seq6
Length=51074515
Score = 87.8 bits (96), Expect = 1e-15
Identities = 121/163 (74%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGAT-ACACTTTCTGGGA-TTAGCTCCCCCTCGC 59
|||||||||| || |||| || || ||| || || | || ||||||| ||||||
Sbjct 49416531 CGAGTTGCAGCCTGCAATACGAAC--CGAGGACGGGTTTTTAGAGTTAGCTCACCCTCGT 49416588
Query 60 GGGTTGGCGGCCCTCTGTA-TGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGC 118
||| | | ||| ||| ||| |||||||| ||||||| | || | ||||| ||
Sbjct 49416589 GGGATCTTGATCCTTTGTCCTGT-CCATTGTAGCACGTGTGTCGTCCAAGGCATAAAGGG 49416647
Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||||| ||||||||||||||| |||||||||||| || ||||
Sbjct 49416648 CATGATGACTTGACGTCATCCTCACCTTCCTCCGACTTATCAC 49416690
Score = 75.2 bits (82), Expect = 9e-12
Identities = 112/159 (70%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
|||||| || || |||||| | | ||| ||| ||| ||||||| ||| || ||
Sbjct 37358308 GAGTTGTAGCCTGCAATCCAAATTGCGAACGGGTTTTTGGAGTTAGCTCATCCTTGCAGG 37358367
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| ||| |||| ||| |||||||| ||||||| || | |||||||| ||||
Sbjct 37358368 ATTGCGACCCTTTGTCCCATCCATTGTAGCACGTGTGTCACCTAAGGCATAAGGGGCATG 37358427
Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|||||||||||||| || |||||| || || ||||
Sbjct 37358428 CTAACTTGACGTCATCCTCATCTTCCTTCGACTTATCAC 37358466
>seq12
Length=35429946
Score = 80.6 bits (88), Expect = 2e-13
Identities = 116/161 (72%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60
|||||| ||| ||| ||||| ||| || || || | || ||||||| |||| ||
Sbjct 24049941 CGAGTTACAGCCTATAATCCAAACTGTGA-ACGGGTTTTCAGAGTTAGCTCACCCTAGCA 24049999
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
|| | ||| ||| ||| | |||||||| || ||| |||| |||||||| ||
Sbjct 24050000 GGATCGCGACCCCTTGTCTCGTCCATTGTAGCACATGTATCGCCCATGGCATAAGGGGCA 24050059
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||| ||||||||||||||| ||| ||| ||| | || ||||
Sbjct 24050060 TGATGACTTGACGTCATCCTCACATTCTTCCAGCTTATCAC 24050100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415995832980
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