Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1034 122 7e-26 seq13 114 1e-23 seq1 113 4e-23 seq5 111 1e-22 seq7 104 2e-20 seq8 98.7 8e-19 seq6 87.8 1e-15 seq12 80.6 2e-13 >seq1034 Length=160161 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 106844 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 106785 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 106784 GATCGCGACCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 106725 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 106724 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 106685 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 141972 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 142031 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 142032 GATCGCGACCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 142091 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 142092 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 142131 >seq13 Length=58321163 Score = 114 bits (126), Expect = 1e-23 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 52725987 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 52725929 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 52725928 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 52725869 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||| | ||| | |||| Sbjct 52725868 GCGGACTTGACGTCATCCCCACCTTCGTGAGGTATATCAC 52725829 >seq1 Length=55868233 Score = 113 bits (124), Expect = 4e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 38278197 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 38278256 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| || |||| |||| |||||||| ||| Sbjct 38278257 GATCGCGACCCTTTGTCCCGTCCATTGTAGCACATGTGTCGCCCAGGGCATAAGGGGCAT 38278316 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 38278317 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 38278356 Score = 87.8 bits (96), Expect = 1e-15 Identities = 121/163 (74%), Gaps = 10/163 (6%) Strand=Plus/Minus Query 4 AGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||| ||| |||||||| | ||| | ||| |||| | | |||||||||||||||||| Sbjct 25204385 AGTTACAGCCTACAATCTGAACTGAGGATGGGCTTTTAGAG-TTAGCTCCCCCTCGCGGG 25204327 Query 63 TTGGCGGCCCTCTGT---ATGTACCATTGTATGACGTGTGAAGCCCTACC-CATAAGGGC 118 | | | |||| ||| || || ||||| || |||| | ||| |||||||| Sbjct 25204326 ATCGTGACCCTTTGTTCCATATA---TTGTAGCACATGTGTC-CTCTAGTTCATAAGGGG 25204271 Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||| ||||||| ||||||| |||||||||||| || |||| Sbjct 25204270 CATGATGACTTGATGTCATCCTCACCTTCCTCCGACTTATCAC 25204228 >seq5 Length=64140413 Score = 111 bits (122), Expect = 1e-22 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| |||||||||| | ||| |||| ||| |||||||| ||| Sbjct 54224242 TTTTTGGAGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGTCCATTGTAGCACG 54224183 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| |||||||| ||||| ||||||||||||||| ||||||||||||| | Sbjct 54224182 TGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCT 54224123 Query 156 TGTCAC 161 | |||| Sbjct 54224122 TATCAC 54224117 Score = 86.0 bits (94), Expect = 5e-15 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| |||||||| | | ||| |||| ||| |||||||| | | Sbjct 49189864 TTTTTGGAGTTAGCTCACCCTCGCGAGATCGCGACCCTTTGTCCCGTCCATTGTAGCATG 49189805 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| ||| |||||||| ||||| ||||||||||||||| |||||| ||||| || Sbjct 49189804 TGTGTCGCCTAGTGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTTCTCCGCTT 49189745 Score = 80.6 bits (88), Expect = 2e-13 Identities = 113/159 (71%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| || ||||| | ||| | ||| ||| |||||| |||| || | Sbjct 8967855 GAGTTGCAGCCTGCAATCTGAACTGAGGACGGGTTTTTGGAGTTAGCTTACCCTTACGAG 8967796 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | | | |||| ||| | |||||| | ||||| ||| | |||||||| |||| Sbjct 8967795 ATCGTGACCCTTTGTCCCGTCTATTGTAGCATGTGTGTCTCCCAAGGCATAAGGGGCATG 8967736 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||| ||| || |||| Sbjct 8967735 ATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 8967697 >seq7 Length=60982465 Score = 104 bits (114), Expect = 2e-20 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60 ||||||| || ||||||| || ||| | ||| || | || ||||||| |||||||| Sbjct 51680989 CGAGTTGTAGCCTACAATTCGAACTGAGG-ACAGGTTTTTAGAGTTAGCTCACCCTCGCG 51680931 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || |||| ||| |||||||| ||||||| ||| | ||||| || || Sbjct 51680930 GGATTACGACCCTTTGTCCCGTCCATTGTAGCACGTGTGTTGCCTAAGGCATAAAGGGCA 51680871 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| |||||||||| || || |||| Sbjct 51680870 TGATGACTTGACGTCATCCTCACCTTCCTCTGGCTTATCAC 51680830 Score = 80.6 bits (88), Expect = 2e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| |||| || || | | |||||||| ||||| ||||||||||||||| || Sbjct 19363458 CCATTGTAGCACGTTTGTCGCTCAAGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 19363517 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| || |||| Sbjct 19363518 CCTTCCTCCGGCTTATCAC 19363536 >seq8 Length=57128820 Score = 98.7 bits (108), Expect = 8e-19 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||| ||| | ||| ||| | | ||||||| ||||||| Sbjct 26402241 CGAGTTGCAGCCTGTAATCCAAACTGAGGATGGGTTTTTAGAG-TTAGCTCACCCTCGCA 26402183 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||| |||| |||||||| ||||||| |||| |||||||||| Sbjct 26402182 AGATCGCAACCCTTTGTACCGTCCATTGTAGCACGTGTGTCGCCCAGGGTATAAGGGCCA 26402123 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| |||||||||||| || |||| Sbjct 26402122 TGATGACTTGACGTCATCCTCACCTTCCTCCGACTTATCAC 26402082 >seq6 Length=51074515 Score = 87.8 bits (96), Expect = 1e-15 Identities = 121/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGAT-ACACTTTCTGGGA-TTAGCTCCCCCTCGC 59 |||||||||| || |||| || || ||| || || | || ||||||| |||||| Sbjct 49416531 CGAGTTGCAGCCTGCAATACGAAC--CGAGGACGGGTTTTTAGAGTTAGCTCACCCTCGT 49416588 Query 60 GGGTTGGCGGCCCTCTGTA-TGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGC 118 ||| | | ||| ||| ||| |||||||| ||||||| | || | ||||| || Sbjct 49416589 GGGATCTTGATCCTTTGTCCTGT-CCATTGTAGCACGTGTGTCGTCCAAGGCATAAAGGG 49416647 Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||| ||||||||||||||| |||||||||||| || |||| Sbjct 49416648 CATGATGACTTGACGTCATCCTCACCTTCCTCCGACTTATCAC 49416690 Score = 75.2 bits (82), Expect = 9e-12 Identities = 112/159 (70%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||| || || |||||| | | ||| ||| ||| ||||||| ||| || || Sbjct 37358308 GAGTTGTAGCCTGCAATCCAAATTGCGAACGGGTTTTTGGAGTTAGCTCATCCTTGCAGG 37358367 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| |||||||| ||||||| || | |||||||| |||| Sbjct 37358368 ATTGCGACCCTTTGTCCCATCCATTGTAGCACGTGTGTCACCTAAGGCATAAGGGGCATG 37358427 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||| || |||||| || || |||| Sbjct 37358428 CTAACTTGACGTCATCCTCATCTTCCTTCGACTTATCAC 37358466 >seq12 Length=35429946 Score = 80.6 bits (88), Expect = 2e-13 Identities = 116/161 (72%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60 |||||| ||| ||| ||||| ||| || || || | || ||||||| |||| || Sbjct 24049941 CGAGTTACAGCCTATAATCCAAACTGTGA-ACGGGTTTTCAGAGTTAGCTCACCCTAGCA 24049999 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | ||| ||| ||| | |||||||| || ||| |||| |||||||| || Sbjct 24050000 GGATCGCGACCCCTTGTCTCGTCCATTGTAGCACATGTATCGCCCATGGCATAAGGGGCA 24050059 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||| ||| ||| | || |||| Sbjct 24050060 TGATGACTTGACGTCATCCTCACATTCTTCCAGCTTATCAC 24050100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415995832980