Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1034 163 5e-38 seq8 122 1e-25 seq7 120 5e-25 seq4 113 7e-23 seq12 105 1e-20 seq5 104 4e-20 seq2 104 4e-20 seq13 93.3 7e-17 seq11 93.3 7e-17 seq6 84.2 4e-14 >seq1034 Length=160161 Score = 163 bits (180), Expect = 5e-38 Identities = 207/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 106291 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 106232 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 106231 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 106172 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 106171 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 106112 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 106111 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 106052 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 106051 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 106007 Score = 163 bits (180), Expect = 5e-38 Identities = 207/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 142525 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 142584 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 142585 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 142644 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 142645 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 142704 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 142705 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 142764 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 142765 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 142809 >seq8 Length=57128820 Score = 122 bits (134), Expect = 1e-25 Identities = 198/285 (69%), Gaps = 4/285 (1%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| ||||| | | |||||| || ||| || ||||||||| Sbjct 5977416 GCTTTCGTCTCTCAGTATCAGTGTCGGCCCAGCAGAGTGCTTTCACCGTTGGTGTTCCG- 5977358 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || ||||||||| |||||| | ||| | |||||| |||| || | | |||| || Sbjct 5977357 ---ATCTCTACGCATATCACCGTTCCACTGGAAATTCCCTCTGCCCCTACCGTACTCCAG 5977301 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | |||||||||| | ||| || | ||||| Sbjct 5977300 CTTGGTAGTTTCCACCGCCTGTCCAAGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 5977241 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || | || | | |||||| ||||| |||||||||||||||||| ||| |||||| Sbjct 5977240 AGCCACTTATAGACGCTTTACGTCCAATCAATCCGGATAACGCTTGCATCCTCTGTATTA 5977181 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| |||||||| ||| || Sbjct 5977180 CCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCGCCAGATA 5977136 >seq7 Length=60982465 Score = 120 bits (132), Expect = 5e-25 Identities = 189/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| || ||| | | ||||| || ||||||| |||||||| | | || |||| Sbjct 29984851 CTCAGTGTTAGTGTCGGCTCAGCAGAGTGCTTTCGCCATTGGTGTTCTTTCCGATCTCTA 29984910 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 ||||||||||| || ||| |||||| ||| | || | | |||| || |||| Sbjct 29984911 CGCATTTCACCACTCCACCGAAAATTCCCTTTGGCCCTACCGTACTCTAGCTTGGTAGTT 29984970 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || | || |||||||| | ||| || | ||||| || ||||| Sbjct 29984971 TCCACCGCCTGTCCAGGATTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTAC 29985030 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | | |||||| |||||| | ||| ||||||||||| ||| |||||||||| ||||| Sbjct 29985031 AAACGCTTTACGCCCAATCATTCCAGATAACGCTTGTATCCTCTGTATTACCGCAGCTGC 29985090 Query 256 TGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 |||||| ||||| ||| ||||||||| || Sbjct 29985091 TGGCACAAAGTTAACCGATGCTTATTCCCCA 29985121 Score = 91.5 bits (100), Expect = 2e-16 Identities = 183/270 (68%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 17 TCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTAC 76 |||| |||||| | | ||| || || |||||| |||||||| | || | || Sbjct 51680420 TCAGTGTCAGTGTCGGCCCAACAGAATGCTTTCGCCGTTGGTGTTCTTTTCGATCTTTAG 51680361 Query 77 GCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTT 136 |||||| | |||| ||| | |||||| |||| || | | |||| || ||||| Sbjct 51680360 GCATTTTATCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTT 51680301 Query 137 CAAATGCAGGCTAT---GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCT 193 | | ||| |||| |||||||||| | ||| | ||||| || ||| Sbjct 51680300 CCACTGC---CTATCCAGGGTTGAGCCATGGGATTTGATGGTGGACTTAAAAAGCCACCT 51680244 Query 194 ACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCT 253 ||| | |||||| |||||| | || ||| || ||||| | | |||||||||||||| Sbjct 51680243 ACAGACTCTTTACGCCCAATCATTCTAGATGACACTTGCGTCTTTTGTATTACCGCGGCT 51680184 Query 254 GCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||| |||||||| ||||||||| Sbjct 51680183 GCTGGCACAAAGTTAGCCTATGCTTATTCC 51680154 Score = 73.4 bits (80), Expect = 7e-11 Identities = 76/99 (77%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 189 CGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC--GTATTAC 246 |||||||| ||||||||| |||| | | |||| | ||| |||||| | | || |||| Sbjct 59743097 CGCCTACATGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCTCCCCCTGTCTTAC 59743156 Query 247 CGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| ||||||||||| ||||| || || || |||||| Sbjct 59743157 TGCGCCTGCTGGCACGGAGTTAACCAAGGTTTCTTCCTC 59743195 >seq4 Length=62178258 Score = 113 bits (124), Expect = 7e-23 Identities = 190/275 (69%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| || ||| | | |||||| || | |||| |||||||| | | || |||| Sbjct 25537105 CTCAGTGTTAGTGTCAGCCCAGCAGAGTGCTTCCGCCGTTGGTGTTCTTTCCGATCTCTA 25537046 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 ||||||| ||| || ||| | |||||| |||| || | | |||| || |||| Sbjct 25537045 CGCATTTGACCACTCCACCAGAAATTCCTTCTGCCCCTACTGTACTCCAGCTTGGTAGTT 25536986 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || || ||||||||||| | ||| || ||||| | || ||| | Sbjct 25536985 TCCACCGCCTGCCTAGGGTTGAGCCCTGGGATTTGACGGTGGACTTAAAATGCCACCTTC 25536926 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | ||||||||| ||| | ||| |||||||||||| ||| ||||||| || || | Sbjct 25536925 AGATGCTTTACACCTAATCATTCCAGATAACGCTTGCATCCTCTATATTACCACGACTAC 25536866 Query 256 TGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| ||||||||| ||||||||| ||| || Sbjct 25536865 TGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 25536831 >seq12 Length=35429946 Score = 105 bits (116), Expect = 1e-20 Identities = 188/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | |||||| || |||| | |||||||| | | || |||| Sbjct 24050504 CTCAGTGTCAGTGTCAACCCAGCAGAATGCTTTCGTCGTTGGTGTTCTTTCTGATCTCTA 24050563 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 ||||||||||| | ||| |||||| |||| || | | |||| || | ||| Sbjct 24050564 CGCATTTCACCACACCACCAAAAATTCCCTCTGCCCCTACTGTACTCCAGCTTAGTTGTT 24050623 Query 136 TCAAATGCAGG-CTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTA 194 || | || | ||| |||||||||| | ||| ||| | ||||| || |||| Sbjct 24050624 TCTACCGCTTGTCTA-GGGTTGAGCCTTGGGATTTGACAGCGGACTTAAAAAGCCACCTA 24050682 Query 195 CACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTG 254 | | |||||| |||||| | | || |||| |||| | ||| |||||| |||||||| Sbjct 24050683 TAGACACTTTACGCCCAATCATTTCGAATAATGCTTACATCCTTTGTATTATCGCGGCTG 24050742 Query 255 CTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 |||||| ||||| ||| |||||||||||| Sbjct 24050743 TTGGCACAGAGTTACCCGATGCTTATTCCTCA 24050774 Score = 102 bits (112), Expect = 1e-19 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 152 GGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCA 211 |||||||||| | ||| || | ||||| || |||||| | |||||| |||| Sbjct 22125337 GGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCA 22125396 Query 212 ATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 |||| ||| |||||||||||| ||| ||||||||||||||||||||| |||||| | Sbjct 22125397 ATAATTCCAGATAACGCTTGCATCCTCTATATTACCGCGGCTGCTGGCACAAAGTTAGTC 22125456 Query 272 GTGGCTTATTCCTCAGGTA 290 | ||||||||| ||| || Sbjct 22125457 GATGCTTATTCCCCAGATA 22125475 >seq5 Length=64140413 Score = 104 bits (114), Expect = 4e-20 Identities = 196/286 (69%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| |||| |||||| | | |||||| | || ||| | |||||||| | Sbjct 8967303 GCTTTCGTCTCTCAATGTCAGTGTCGGCCCAGCAGACTGCTTTCATCGTTGGTGTTCTTT 8967244 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || ||||||||||||| |||| ||| ||||| ||||||| | | ||| || Sbjct 8967243 TCGATCTCTACGCATTTCATCGCTCCACCAAAAATTCTCCCTGCCTCTACCGTACTTCAG 8967184 Query 126 AAAAACAGTTTCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 |||||| | | | | | | ||||||||||| | | ||| | | ||||| Sbjct 8967183 CTTGGTAGTTTCCATCGTCTGTCCA-GGGTTGAGCCCTTGGATTTGAAGACGGACTTAAA 8967125 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | | |||||||||||||| ||| |||| Sbjct 8967124 AAGCCACCTACAGACGCTTTACGCCCAATCATTTCGGATAACGCTTGCATCCTCTATATT 8967065 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || |||||| |||||| ||||| || ||||||||| ||| || Sbjct 8967064 ACAGCGGCTTCTGGCATAGAGTTAACCAATGCTTATTCCCCAGATA 8967019 Score = 86.0 bits (94), Expect = 1e-14 Identities = 169/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 34 CCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACAC 93 ||||||| || |||||| ||||||||| | || |||| | |||||| || | ||| Sbjct 49871390 CCAGCAAAGTGCTTTCGCCGCTGGTGTTCTTTTCGATCTCTATGTATTTCATCGTTCCAC 49871449 Query 94 ACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGG 153 | |||| ||||||| | |||| || |||||| | || | ||| Sbjct 49871450 CAGATATTCTCTCTGCCTCTACCATACTCCAGCTTGGTAGTTTCCACCGCTTGTCCAGGG 49871509 Query 154 TTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAAT 213 |||||||| | ||| | | ||||| | |||||| | ||||| |||||| Sbjct 49871510 TTGAGCCCTAGGATTTGATGGCAGACTTAAAAAGTCACCTACAAACGCTTTATGCCCAAT 49871569 Query 214 AAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 273 | ||| |||||||||| | | | ||||||||||||||||||||| | ||||||| Sbjct 49871570 TATTCCAGATAACGCTTTCATCATCTGTATTACCGCGGCTGCTGGCATTGATTTAGCCGA 49871629 Query 274 GGCTTATTCC 283 ||||||||| Sbjct 49871630 TGCTTATTCC 49871639 >seq2 Length=62769430 Score = 104 bits (114), Expect = 4e-20 Identities = 194/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || || | |||||||| | Sbjct 30562406 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTTACAGTTGGTGTTCTTT 30562347 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||||| |||||| || ||| |||||| | || || | | |||| | Sbjct 30562346 CCGATCTCTACGCCTTTCACTGCACCACTAAAAATTCCCTCTACCCCTACCGTACTCCAT 30562287 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | || ||| | ||| | |||||||||| | ||| || | ||||| Sbjct 30562286 ATTGGTAGCTTCCACTGCCTGTCCAGGGTTGAGCCTTGGGATTTGACGGCAGACTTAAAA 30562227 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||| ||||||||||| ||| ||||||| Sbjct 30562226 AGCCACCTACAGACACTTTACGCCCAATCATTCCGAATAACGCTTGCATCCTCCGTATTA 30562167 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || ||||| |||| | ||||||||| ||||||||| ||| || Sbjct 30562166 CCACGGCTACTGGTAAAGAGTTAGCCGATGCTTATTCCCCAGATA 30562122 Score = 93.3 bits (102), Expect = 7e-17 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||||| Sbjct 7320809 CCACCTACAGACACTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACC 7320868 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 ||||||| ||||| ||||||| | ||||||||| || Sbjct 7320869 GCGGCTGTTGGCATAAAGTTAGCTGATGCTTATTCCCCA 7320907 Score = 73.4 bits (80), Expect = 7e-11 Identities = 88/120 (73%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 29828025 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 29828084 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || |||||||||||||||||| ||| | |||||| ||||||| | | |||| || Sbjct 29828085 TCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCTCTACCGTACTCCAG 29828144 >seq13 Length=58321163 Score = 93.3 bits (102), Expect = 7e-17 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 192 CTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGG 251 ||||| | |||||| |||||| | | |||||||||||||| ||| | |||||||||| Sbjct 28621054 CTACAAACGCTTTACGCCCAATCATTTCGGATAACGCTTGCATCCTCTGCATTACCGCGG 28621113 Query 252 CTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||| |||||||| | ||||||||| ||| || Sbjct 28621114 CTGTTGGCACAAAGTTAGCCATTGCTTATTCCCCAGATA 28621152 >seq11 Length=62681010 Score = 93.3 bits (102), Expect = 7e-17 Identities = 83/102 (81%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTG--CCACCTACGTATTACCG 248 |||||| | ||||||||||||| | ||||||||||||||| ||| ||| |||||||| Sbjct 21503443 CCTACAAACGCTTTACACCCAATCATTCCGGATAACGCTTGCACCATCTA--TATTACCG 21503386 Query 249 CGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || ||||| |||| |||||||| ||||||||| ||| || Sbjct 21503385 CGACTGCTAGCACAGAGTTAGCCAATGCTTATTCCCCAGATA 21503344 Score = 84.2 bits (92), Expect = 4e-14 Identities = 169/248 (68%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATT-C 102 || ||| | | |||||||| | | |||||||||||||||||| || ||| || |||| | Sbjct 50302701 GCTTTCACTATTGGTGTTCTTTCTGATATCTACGCATTTCACCACTCCAC-CGAAATTTC 50302643 Query 103 CGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCA 162 | ||||| || | | |||| | |||||| | | | ||||||||||| Sbjct 50302642 CCTTTGCCCCTACCGTACTCCAACTTGGTAGTTTCCACCACCTGTCCAGGGTTGAGCCCT 50302583 Query 163 TAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGA 222 | ||| | || || || |||| | |||||| |||||| | || ||| Sbjct 50302582 GGGATTTGATGGTGGATTTAAAAAGCCACCTATAGAAGCTTTACCCCCAATCATTCTGGA 50302523 Query 223 TAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||| |||||| ||| |||||||||||||||||||||| |||||| |||||||| Sbjct 50302522 TAATGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGGTCATGCTTATTC 50302463 Query 283 CTCAGGTA 290 ||| || Sbjct 50302462 ACCAGATA 50302455 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || || ||| | |||||| |||||| | ||| ||||| ||||| |||| ||||||| Sbjct 22254391 CCACCAACATACGCTTTACGCCCAATTATTCCAAATAACACTTGCATCCTATGTATTACT 22254450 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||||| | |||| || ||||||||| Sbjct 22254451 GCGGCTGCTGGCACAAATTTAGTCGATGCTTATTCC 22254486 >seq6 Length=51074515 Score = 84.2 bits (92), Expect = 4e-14 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 |||||||| | | || ||||||||||||| |||| ||| | || ||| | || || Sbjct 14390420 TGGTGTTCTTTCTAATCTCTACGCATTTCATCGCTCCACTGGAAACTCCTTCTACCCCTA 14390361 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTCACA 173 | | |||| || || |||||| | | | | | | ||||||||| | ||| || Sbjct 14390360 CTGTACTCCAGCTTAATAGTTTCCATCGTCTGTCCA-GGGTTGAGCTTTGGGATTTAACG 14390302 Query 174 TCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCC 233 | ||| | || |||||| | |||||| || ||| | || |||||| |||||| Sbjct 14390301 GCAGACCTAAAAAGCCACCTACATACGCTTTACTCCTAATTATTCTGGATAATGCTTGCA 14390242 Query 234 ACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||| ||||| |||||||||||||| |||||||| |||||||| Sbjct 14390241 TCCTCTATATTATTGCGGCTGCTGGCACAGAGTTAGCCAATTCTTATTCC 14390192 Score = 82.4 bits (90), Expect = 1e-13 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 152 GGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCA 211 ||||||||||| || ||| ||| | ||||| || |||| | | ||||||||||| Sbjct 37361944 GGTTGAGCCCAGAGATTTGACAGCGGACTTAAAAAGCCACCTATAGACGCTTTACACCCA 37362003 Query 212 ATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 || | ||| |||||| |||| ||| |||||| ||| || ||||||| ||||| || Sbjct 37362004 ATCATTCCAGATAACATTTGCATCCTCTATATTACTGCGACTACTGGCACAGAGTTAACC 37362063 Query 272 GTGGCTTATTCCTCA 286 ||||||||| || Sbjct 37362064 AATGCTTATTCCCCA 37362078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828791698014