Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 132 9e-29
seq6 120 6e-25
seq11 98.7 2e-18
seq1 98.7 2e-18
seq5 96.9 6e-18
seq8 84.2 4e-14
seq3 84.2 4e-14
seq2 77.0 6e-12
>seq1034
Length=160161
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 109513 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 109572
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 109573 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 109625
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | ||| || ||| ||||||||||||||||| |||
Sbjct 109626 C--TGC-TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGT 109682
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 109683 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 109742
Query 249 CCT 251
|||
Sbjct 109743 CCT 109745
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 139303 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 139244
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 139243 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 139191
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | ||| || ||| ||||||||||||||||| |||
Sbjct 139190 C--TGC-TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGT 139134
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 139133 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 139074
Query 249 CCT 251
|||
Sbjct 139073 CCT 139071
>seq6
Length=51074515
Score = 120 bits (132), Expect = 6e-25
Identities = 175/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||| ||| ||| | ||| |||
Sbjct 12259152 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTTGTAAGCGACGAAATGCTTTGGG 12259211
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 12259212 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 12259264
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | ||| || ||| |||||||| |||||||| |||
Sbjct 12259265 C--TGC-TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCGAACTAAAACATCTTAGT 12259321
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 12259322 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 12259381
Query 249 CCT 251
|||
Sbjct 12259382 CCT 12259384
Score = 111 bits (122), Expect = 3e-22
Identities = 173/243 (71%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 17617300 GGTGGATACCTAGGCACCCAAAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 17617359
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | || || ||||| || ||| || |||| ||| |
Sbjct 17617360 GAGTTAA-AAATAAGCGTAGACCCAGAGATTCCCAAATAGGTCAACC------TTTCGAA 17617412
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| || || | ||| || ||| || |||||||||||||| |||
Sbjct 17617413 C--TGC-TGCTGAATCTATGGGCAGACAAGAGACAACCTGGTGAACTGAAACATCTTAGT 17617469
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| | || |||||||| ||| | |||||||| ||||| |||||||||||||||| ||
Sbjct 17617470 AGCCGGAGAAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAGCAG 17617529
Query 249 CCT 251
|||
Sbjct 17617530 CCT 17617532
Score = 93.3 bits (102), Expect = 8e-17
Identities = 169/243 (70%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| || || ||| ||||| | ||||| | | | ||| || |
Sbjct 14393606 GGTGGATACCTAGGCACCTAGAGACGAGGAAGGGCATAGTAAGCAACAAAATGCTTCGAG 14393665
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
| || | ||| | || | |||| | ||||| | |||| || |||| ||||
Sbjct 14393666 GTGTTAA-AAATAAACGTAGATCTGGAGATTCCTGAATAGGTTAACCT-----TTTGA-- 14393717
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
|||| | |||||| ||| || | ||| || ||| ||| ||||||||||||| |||
Sbjct 14393718 -ATTGT-TACTGAATCCATGGGCAGACAAGAGACAACCTGGCAAACTGAAACATCTTAGT 14393775
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| | ||||||| ||| ||| |||||||| ||||| | |||||||||||| | ||
Sbjct 14393776 AGCCGGAGGAAAAAAAAGCAAAAACGATTCCCATAGTAGCGACGAGCGAAATGGAAGCAG 14393835
Query 249 CCT 251
|||
Sbjct 14393836 CCT 14393838
>seq11
Length=62681010
Score = 98.7 bits (108), Expect = 2e-18
Identities = 118/157 (75%), Gaps = 10/157 (6%)
Strand=Plus/Minus
Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148
|||||| ||||| |||||| || |||| | || ||||| || ||||| |||
Sbjct 3857495 GATCCGGAGATTCCCGAATAGGTCAACCTCG-----TGA---ATTGC-TGTTGAATCCAT 3857445
Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207
||| | ||| || ||| ||||||||||||||||| |||||||| | ||||||||| |
Sbjct 3857444 AGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCTGAAAGAAAAGAAAGC 3857385
Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
|| | |||||| ||||| ||||||||||| ||||
Sbjct 3857384 AAAAGTGATTCCTGTAGTAGCGGCGAGCGAAACGGGA 3857348
>seq1
Length=55868233
Score = 98.7 bits (108), Expect = 2e-18
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
||||||||||||||||| |||||| | ||||||||||| ||| | ||||||| |||||
Sbjct 23190713 GGCGAACTGAAACATCTTAGTAGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 23190654
Query 228 TGGCGAGCGAAATGGGATGAGCCT 251
|||||||||||||||| |||||
Sbjct 23190653 CGGCGAGCGAAATGGGAGCAGCCT 23190630
Score = 93.3 bits (102), Expect = 8e-17
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
||||||||||||||||| |||||| | ||||||||||| ||| | ||||||| ||||
Sbjct 52332905 GGCGAACTGAAACATCTTAGTAGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTCGTAG 52332846
Query 228 TGGCGAGCGAAATGGGATGAGCCT 251
|||||||||||||||| |||||
Sbjct 52332845 CGGCGAGCGAAATGGGAGCAGCCT 52332822
>seq5
Length=64140413
Score = 96.9 bits (106), Expect = 6e-18
Identities = 171/245 (70%), Gaps = 11/245 (4%)
Strand=Plus/Minus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| | | ||| | || ||| |||| |||||| ||| | ||| ||
Sbjct 49868191 ATGGTGGATACTTAGGCACGCAAAGACGAGAAAGGGTGTAGTAAGCGACGAAATGCTTCG 49868132
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | |||| | ||||| |||||| || |||| |||
Sbjct 49868131 GGGAGTTAA-AAATAAGTGTAGATCTGGAGATTCCCGAATAGGTCAACC------TTTCA 49868079
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
|||||| ||||||| ||| || | ||| || ||| ||||||||||||||||| |
Sbjct 49868078 A--ATTGCA-GCTGAATCCATGGGCAGACAAGAGACAACTTGGCGAACTGAAACATCTTA 49868022
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
|||| | ||||||||||| ||| | |||||| ||||| ||| ||| ||||||||
Sbjct 49868021 CTAGCAGAAGGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGCGGCTAGCAAAATGGGAGT 49867962
Query 247 AGCCT 251
|||||
Sbjct 49867961 AGCCT 49867957
Score = 82.4 bits (90), Expect = 1e-13
Identities = 168/245 (69%), Gaps = 15/245 (6%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| | | | || ||| ||||| ||||||| ||| | ||| |||
Sbjct 1711560 GGTGGATACCTAGTCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTAGGG 1711501
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
||| | ||| | || | |||| | ||||| ||||| || |||| || |
Sbjct 1711500 AAGTT-GAAAATAAACGTAGATCTGGAGATTCTCGAATAGGTCAACC-------TT---T 1711452
Query 130 CA--TTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
|| |||| |||||||| ||| |||| ||| || ||| ||||||||||||||||| |
Sbjct 1711451 CAAGTTGC-TGCTGAATCCATGGGTAGACAATAGACAACCTGGCGAACTGAAACATCTTA 1711393
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
|||| | ||||||| || ||| ||||| | | |||| | ||||||||||||
Sbjct 1711392 GTAGTCGAAGGAAAATGAAGCAAAAATGATTCACGTAATAGTATCAAGCGAAATGGGAAT 1711333
Query 247 AGCCT 251
|||||
Sbjct 1711332 AGCCT 1711328
>seq8
Length=57128820
Score = 84.2 bits (92), Expect = 4e-14
Identities = 89/116 (77%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|| ||||| ||| || | ||| ||| ||| ||||||||||||||||| |||||| |
Sbjct 13800853 TGTTGAATCCATGGGCAGACAAGAGCCAACTTGGCGAACTGAAACATCTTAGTAGCCAGA 13800794
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||||||| || | ||||||| ||||| |||| ||||||||| |||||
Sbjct 13800793 GGAAAAGAAAGAAAAAGTTATTCCCATAGTAGCCGCGAATGAAATGGGAGTAGCCT 13800738
Score = 84.2 bits (92), Expect = 4e-14
Identities = 89/116 (77%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||| ||| ||| |||| ||| || ||| || |||||||||||||| |||||| | |
Sbjct 28324071 TGCTAAATCCATGGGTAGACAAGAGACAACCTGGTGAACTGAAACATCTTAGTAGCCGGA 28324012
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||||||| ||| | |||||| | ||||| || |||||||| || |||||
Sbjct 28324011 GGAAAAGAAAGCAAAAGCGATTCCTATAGTAGCTGCAAGCGAAATAAGAGCAGCCT 28323956
>seq3
Length=45765648
Score = 84.2 bits (92), Expect = 4e-14
Identities = 89/116 (77%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||| ||| ||| |||| ||| || ||| ||||||||||||||||| ||||| | |
Sbjct 38720829 TGCTAAATCCATGGGTAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGTCGGA 38720888
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||||||| ||| | ||||| | | ||| || ||| ||||||||| |||||
Sbjct 38720889 GGAAAAGAAAGCAAAAGCGATTCTCGCAATAGCGGTGAGTGAAATGGGAGCAGCCT 38720944
>seq2
Length=62769430
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
||||||||||||||||| |||||| | ||| ||||||| || | ||||||| |||||
Sbjct 40968871 GGCGAACTGAAACATCTTAGTAGCCGGAGGGAAAGAAAGTAAAAGTGATTCCCGTAGTAG 40968930
Query 228 TGGCGAGCGAAATGGGA 244
|| ||| |||||||||
Sbjct 40968931 CGGTGAGTGAAATGGGA 40968947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918390503744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |