Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1034 132 9e-29 seq6 120 6e-25 seq11 98.7 2e-18 seq1 98.7 2e-18 seq5 96.9 6e-18 seq8 84.2 4e-14 seq3 84.2 4e-14 seq2 77.0 6e-12 >seq1034 Length=160161 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 109513 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 109572 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 109573 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 109625 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | ||| || ||| ||||||||||||||||| ||| Sbjct 109626 C--TGC-TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGT 109682 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 109683 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 109742 Query 249 CCT 251 ||| Sbjct 109743 CCT 109745 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 139303 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 139244 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 139243 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 139191 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | ||| || ||| ||||||||||||||||| ||| Sbjct 139190 C--TGC-TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGT 139134 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 139133 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 139074 Query 249 CCT 251 ||| Sbjct 139073 CCT 139071 >seq6 Length=51074515 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||| ||| ||| | ||| ||| Sbjct 12259152 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTTGTAAGCGACGAAATGCTTTGGG 12259211 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 12259212 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 12259264 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | ||| || ||| |||||||| |||||||| ||| Sbjct 12259265 C--TGC-TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCGAACTAAAACATCTTAGT 12259321 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 12259322 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 12259381 Query 249 CCT 251 ||| Sbjct 12259382 CCT 12259384 Score = 111 bits (122), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 17617300 GGTGGATACCTAGGCACCCAAAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 17617359 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | || || ||||| || ||| || |||| ||| | Sbjct 17617360 GAGTTAA-AAATAAGCGTAGACCCAGAGATTCCCAAATAGGTCAACC------TTTCGAA 17617412 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| || || | ||| || ||| || |||||||||||||| ||| Sbjct 17617413 C--TGC-TGCTGAATCTATGGGCAGACAAGAGACAACCTGGTGAACTGAAACATCTTAGT 17617469 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | || |||||||| ||| | |||||||| ||||| |||||||||||||||| || Sbjct 17617470 AGCCGGAGAAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAGCAG 17617529 Query 249 CCT 251 ||| Sbjct 17617530 CCT 17617532 Score = 93.3 bits (102), Expect = 8e-17 Identities = 169/243 (70%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| || || ||| ||||| | ||||| | | | ||| || | Sbjct 14393606 GGTGGATACCTAGGCACCTAGAGACGAGGAAGGGCATAGTAAGCAACAAAATGCTTCGAG 14393665 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 | || | ||| | || | |||| | ||||| | |||| || |||| |||| Sbjct 14393666 GTGTTAA-AAATAAACGTAGATCTGGAGATTCCTGAATAGGTTAACCT-----TTTGA-- 14393717 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 |||| | |||||| ||| || | ||| || ||| ||| ||||||||||||| ||| Sbjct 14393718 -ATTGT-TACTGAATCCATGGGCAGACAAGAGACAACCTGGCAAACTGAAACATCTTAGT 14393775 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||| ||| ||| |||||||| ||||| | |||||||||||| | || Sbjct 14393776 AGCCGGAGGAAAAAAAAGCAAAAACGATTCCCATAGTAGCGACGAGCGAAATGGAAGCAG 14393835 Query 249 CCT 251 ||| Sbjct 14393836 CCT 14393838 >seq11 Length=62681010 Score = 98.7 bits (108), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 10/157 (6%) Strand=Plus/Minus Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 |||||| ||||| |||||| || |||| | || ||||| || ||||| ||| Sbjct 3857495 GATCCGGAGATTCCCGAATAGGTCAACCTCG-----TGA---ATTGC-TGTTGAATCCAT 3857445 Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 ||| | ||| || ||| ||||||||||||||||| |||||||| | ||||||||| | Sbjct 3857444 AGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCTGAAAGAAAAGAAAGC 3857385 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 || | |||||| ||||| ||||||||||| |||| Sbjct 3857384 AAAAGTGATTCCTGTAGTAGCGGCGAGCGAAACGGGA 3857348 >seq1 Length=55868233 Score = 98.7 bits (108), Expect = 2e-18 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| |||||| | ||||||||||| ||| | ||||||| ||||| Sbjct 23190713 GGCGAACTGAAACATCTTAGTAGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 23190654 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| ||||| Sbjct 23190653 CGGCGAGCGAAATGGGAGCAGCCT 23190630 Score = 93.3 bits (102), Expect = 8e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| |||||| | ||||||||||| ||| | ||||||| |||| Sbjct 52332905 GGCGAACTGAAACATCTTAGTAGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTCGTAG 52332846 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| ||||| Sbjct 52332845 CGGCGAGCGAAATGGGAGCAGCCT 52332822 >seq5 Length=64140413 Score = 96.9 bits (106), Expect = 6e-18 Identities = 171/245 (70%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| | | ||| | || ||| |||| |||||| ||| | ||| || Sbjct 49868191 ATGGTGGATACTTAGGCACGCAAAGACGAGAAAGGGTGTAGTAAGCGACGAAATGCTTCG 49868132 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | |||| | ||||| |||||| || |||| ||| Sbjct 49868131 GGGAGTTAA-AAATAAGTGTAGATCTGGAGATTCCCGAATAGGTCAACC------TTTCA 49868079 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 |||||| ||||||| ||| || | ||| || ||| ||||||||||||||||| | Sbjct 49868078 A--ATTGCA-GCTGAATCCATGGGCAGACAAGAGACAACTTGGCGAACTGAAACATCTTA 49868022 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 |||| | ||||||||||| ||| | |||||| ||||| ||| ||| |||||||| Sbjct 49868021 CTAGCAGAAGGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGCGGCTAGCAAAATGGGAGT 49867962 Query 247 AGCCT 251 ||||| Sbjct 49867961 AGCCT 49867957 Score = 82.4 bits (90), Expect = 1e-13 Identities = 168/245 (69%), Gaps = 15/245 (6%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| | | | || ||| ||||| ||||||| ||| | ||| ||| Sbjct 1711560 GGTGGATACCTAGTCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTAGGG 1711501 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| | ||| | || | |||| | ||||| ||||| || |||| || | Sbjct 1711500 AAGTT-GAAAATAAACGTAGATCTGGAGATTCTCGAATAGGTCAACC-------TT---T 1711452 Query 130 CA--TTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 || |||| |||||||| ||| |||| ||| || ||| ||||||||||||||||| | Sbjct 1711451 CAAGTTGC-TGCTGAATCCATGGGTAGACAATAGACAACCTGGCGAACTGAAACATCTTA 1711393 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 |||| | ||||||| || ||| ||||| | | |||| | |||||||||||| Sbjct 1711392 GTAGTCGAAGGAAAATGAAGCAAAAATGATTCACGTAATAGTATCAAGCGAAATGGGAAT 1711333 Query 247 AGCCT 251 ||||| Sbjct 1711332 AGCCT 1711328 >seq8 Length=57128820 Score = 84.2 bits (92), Expect = 4e-14 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || ||||| ||| || | ||| ||| ||| ||||||||||||||||| |||||| | Sbjct 13800853 TGTTGAATCCATGGGCAGACAAGAGCCAACTTGGCGAACTGAAACATCTTAGTAGCCAGA 13800794 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| || | ||||||| ||||| |||| ||||||||| ||||| Sbjct 13800793 GGAAAAGAAAGAAAAAGTTATTCCCATAGTAGCCGCGAATGAAATGGGAGTAGCCT 13800738 Score = 84.2 bits (92), Expect = 4e-14 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||| ||| ||| |||| ||| || ||| || |||||||||||||| |||||| | | Sbjct 28324071 TGCTAAATCCATGGGTAGACAAGAGACAACCTGGTGAACTGAAACATCTTAGTAGCCGGA 28324012 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | |||||| | ||||| || |||||||| || ||||| Sbjct 28324011 GGAAAAGAAAGCAAAAGCGATTCCTATAGTAGCTGCAAGCGAAATAAGAGCAGCCT 28323956 >seq3 Length=45765648 Score = 84.2 bits (92), Expect = 4e-14 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||| ||| ||| |||| ||| || ||| ||||||||||||||||| ||||| | | Sbjct 38720829 TGCTAAATCCATGGGTAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGTCGGA 38720888 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||| | | ||| || ||| ||||||||| ||||| Sbjct 38720889 GGAAAAGAAAGCAAAAGCGATTCTCGCAATAGCGGTGAGTGAAATGGGAGCAGCCT 38720944 >seq2 Length=62769430 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| |||||| | ||| ||||||| || | ||||||| ||||| Sbjct 40968871 GGCGAACTGAAACATCTTAGTAGCCGGAGGGAAAGAAAGTAAAAGTGATTCCCGTAGTAG 40968930 Query 228 TGGCGAGCGAAATGGGA 244 || ||| ||||||||| Sbjct 40968931 CGGTGAGTGAAATGGGA 40968947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918390503744