Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1034 123 5e-26 seq13 116 8e-24 seq11 102 2e-19 seq12 95.1 3e-17 seq7 93.3 9e-17 seq5 82.4 2e-13 seq1 82.4 2e-13 >seq1034 Length=160161 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 106047 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 105999 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 105998 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 105946 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 105945 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 105886 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 105885 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 105826 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 105825 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 105787 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 142769 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 142817 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 142818 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 142870 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 142871 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 142930 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 142931 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 142990 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 142991 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 143029 >seq13 Length=58321163 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 52725131 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 52725072 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 52725071 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 52725012 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 52725011 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 52724952 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 52724951 GCAGGCTCATCAAACAGCG 52724933 Score = 84.2 bits (92), Expect = 5e-14 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | | || | ||||| ||||||||| || | ||| ||| || Sbjct 17238757 AAAAGAAGTTCACGACCTGTGGG-CCTTCTACCTTCACGCGACATTGCTCTGTCAAGCTT 17238699 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | | |||| || ||||| || |||| |||||| ||||||| ||| ||||||||||| Sbjct 17238698 TTGCCGATTGCGAAAAATTCCCCATTGCTCCCTCCCATAGGAGTCTGGGCCGTGTCTCAG 17238639 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | || ||||| || | |||| || || Sbjct 17238638 TCTCAGTGTGGCTGATCATCCTTTCGGA 17238611 >seq11 Length=62681010 Score = 102 bits (112), Expect = 2e-19 Identities = 157/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| |||| || | | ||||| ||| ||| | | ||| |||| || Sbjct 21503321 AAAAGAAGTTCACAACCCATGGG-CCTTCTACCTCGACGTGGCATTGCTCAGTCAGGCTT 21503263 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||| ||||||||| ||| ||||||||||| Sbjct 21503262 TCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCTCGTAGGAGTCTGGGCCGTGTCTCAG 21503203 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||| || | ||| ||| | | | ||| || || Sbjct 21503202 TCCCAGTGTGGCCGATCATCCTCTTGGACCAACTACTAATCATCGCTTTGGTAAGCTATT 21503143 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 || | || |||| ||||| ||||| ||| || | |||| Sbjct 21503142 GCCTCACCAACTAGCTAATTAGACGCAAGCCCCTCCTCGACCG 21503100 >seq12 Length=35429946 Score = 95.1 bits (104), Expect = 3e-17 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | | | | ||||| |||||| | | | ||| ||| || Sbjct 22125498 AAAAGAAGTTCACGACCTATGGG-CCTTCTACCTTCAAGTGGCATTGCTCCGTCAAGCTT 22125556 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || | ||| || ||||||||||||||||||| ||| ||||||||||| Sbjct 22125557 TCGCCCATTGCGGAAAACTCCCCATTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 22125616 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 22125617 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 22125676 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 22125677 GCCTCACCAACTAGCTAAT 22125695 >seq7 Length=60982465 Score = 93.3 bits (102), Expect = 9e-17 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| |||||||| Sbjct 59792631 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCTCA 59792572 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| |||| ||||| | |||||| ||| ||| |||| || | ||| Sbjct 59792571 CTGCTGCCCACCGTGGGAGTCCGAGTTGTGTCTTAGTCCCAGCGTGGCTGATCATCCGAA 59792512 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 59792511 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACAAT 59792452 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 59792451 GCAGGCTCATCAAACAGCG 59792433 Score = 77.0 bits (84), Expect = 7e-12 Identities = 122/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||| | | | || ||| |||||| |||| ||||| || Sbjct 59743249 CCTTCTTCACTCACGCGATATTGCTAGATTGGGCTTTCGCCCATTGTCCAAGATTCCCCA 59743308 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| | || ||||| || ||||||||||| ||| ||| | | | || Sbjct 59743309 CTGCTGCCCCATGTGGGAGTCCGGGTCGTGTCTCAGTCCCACTGTAGCTAATCATCTGAA 59743368 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| Sbjct 59743369 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTAACCGACTACCTAAT 59743423 >seq5 Length=64140413 Score = 82.4 bits (90), Expect = 2e-13 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 || ||| | |||| || ||||| |||| ||||||||| ||||||| ||| |||||||| Sbjct 49871725 CTTTCGCCTATTGCAAAAAATTCCCCACTACTGCCTCCCCTAGGAGTCTGGGCCGTGTCT 49871784 Query 198 CAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCC 257 |||| | | ||| | || | ||||||| || | ||| ||| | | || ||| || Sbjct 49871785 CAGTCCTAGTGTAGTTGATCATCCTCTCGGACCAACTACTGATCATCGCCTTGGTAAGCT 49871844 Query 258 GTTACCCCGCCTACTACCTAATGGAACG 285 || || | || |||| |||||| |||| Sbjct 49871845 ATTGCCTCACCAACTAGCTAATGAAACG 49871872 Score = 75.2 bits (82), Expect = 2e-11 Identities = 139/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACT-TGGCTGGTTCAGACT 139 ||| |||||| || | | || | ||||| |||||| | || | | ||| ||||||| Sbjct 8966996 AAATGAAGTTCACGACCTGTGGG-CCTTCTACCTTCAAG-TAGTATTGCTCCGTCAGACT 8966939 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 | |||||| || |||| || |||||||| ||||| ||| | |||||||||||| Sbjct 8966938 TTAACCCATTGCGAAAAATTCTCCATTGCTGCCTTTCGTAGAAGTCTAGACCGTGTCTCA 8966879 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259 || ||| ||||| || | ||||||| || | ||| ||| | | || | | || | Sbjct 8966878 GTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGATAAGCTAT 8966819 Query 260 TACCCCGCCTACTACCTAAT 279 | || | || |||| ||||| Sbjct 8966818 TGCCTCACCAACTAGCTAAT 8966799 >seq1 Length=55868233 Score = 82.4 bits (90), Expect = 2e-13 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 164 ACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTC 223 |||||||||||||| |||||| ||| |||||||||||| ||| ||||| || | ||||| Sbjct 16800396 ACTGCTGCCTCCCGCAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTC 16800337 Query 224 TCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAA 278 ||||| |||| ||| | | || ||| || || || | || |||| |||| Sbjct 16800336 TCAGACTAGCTATTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAA 16800282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068788948608