Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 143 2e-29 seq1 105 5e-18 >seq11 Length=62681010 Score = 143 bits (158), Expect = 2e-29 Identities = 538/838 (64%), Gaps = 8/838 (1%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || || ||||| | ||||| |||||| |||| || Sbjct 8941779 ATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGATCTGTCTTCCGAT 8941838 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| | | | || ||| || || ||||||| || || | || Sbjct 8941839 CTTCGTCACTGGGAAACTCTCACCGCCGATGAGCACCACTTCATTAGTCACGTTCTCGCC 8941898 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || || ||||| || || || || ||| |||||| | | || ||| | | ||| Sbjct 8941899 TTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAG 8941958 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || | || ||||||||| ||| || || ||||| || || || || ||| ||||| Sbjct 8941959 GTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTATCGAAAATATCCAC 8942018 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || |||||||||||| | || |||| || ||||| | || | ||| | || Sbjct 8942019 TCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAAGAACCGT 8942078 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | ||| |||||||||||| | ||| ||| ||||| || ||||| | || Sbjct 8942079 CTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGAAA 8942138 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| | | | | || || | ||||| || | || ||||| || || Sbjct 8942139 TGGATCGACGGCGGA---GAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAA 8942195 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | |||||| ||| || || || |||||||| || || | || | ||| Sbjct 8942196 GGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATG 8942255 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 ||||| | || ||| || ||||| || ||||| || || || | || || ||||| Sbjct 8942256 CCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTGCGATTTC 8942315 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 ||| ||||| | | | | || ||| || | || || ||||| ||| | | | Sbjct 8942316 GCTTGCTTGCTGTACTCTCTC-CTCCGGTCAAAGCTGAGT--GAAGAGCGCGTGAGGGGG 8942372 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 || || | || ||||| || || ||| || | || ||| ||||| | | Sbjct 8942373 ATAGTGAGGGACGCGGTGGACATAGAGAGGGAGTTCGTATGCGATGCTCTGCCCTGCGCG 8942432 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 | | || ||||| | | ||||| | ||| || || || || || || || ||| Sbjct 8942433 TTGGTTGGGATGAACGGCGAGTTAATGAGTCGGTACATCGAGTTCGTGGCGGATCGGCTG 8942492 Query 61816 TTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 ||| | || ||||| | | ||| || ||| | ||||||||||||| ||||| Sbjct 8942493 CTGGGAGCGTTAGGGTACGGA-AAGATGTACAATGTGGTCAACCCATTTGATTGGATGGA 8942551 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 |||| ||| || | || || || ||||| ||||||||| | || || || |||||| Sbjct 8942552 ACTGATATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGGGTTGGAGAGTATCAA 8942609 >seq1 Length=55868233 Score = 105 bits (116), Expect = 5e-18 Identities = 533/840 (63%), Gaps = 16/840 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || || ||||| | ||||| || ||| | || || Sbjct 54862204 ATGTACAAGAAAGCCGAAGCCTCTTTTTGGACTGCCGAGGAAGTTGATCTCTCTTCCGAT 54862263 Query 61156 ATGAATGACTGGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | ||||| | | ||| || || |||| || ||||| | ||||| | || Sbjct 54862264 CTTCCACACTGGCAAAATCTTAACGC-CGACGAACGCCACTTCATCAGTCATGTCCTTGC 54862322 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || || || |||||| || ||| | | || ||| | | || Sbjct 54862323 CTTCTTCGCCGCATCCGATGGCATCGTCCTAGAAAATCTCGCCGTTCGCTTCATGAAAGA 54862382 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||| ||| | ||||||||||| || || || ||||| || ||||| |||||| |||| Sbjct 54862383 GGTCCAAATCGCGGAGGCGCGTGCATTTTATGGATTCCAAATCGCCATCGAGAATATCCA 54862442 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| |||||||| ||| | ||| |||| || || || | || | ||| | || Sbjct 54862443 CTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATTAAAGATTCCACCGAAAAGAACCG 54862502 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| | || | || ||| | ||| ||| ||||| |||||||| || || Sbjct 54862503 CCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGCTTTGAA 54862562 Query 61455 TTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| || |||| | | |||| ||||| || | || || || || Sbjct 54862563 ATGGATC-----GACGGCGGCGAAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTGCGTA 54862617 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 || || |||||||| || || || || |||||||| || || || || | Sbjct 54862618 GAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGGTTAAAAAAGCGCGGGTTA 54862677 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || ||| || ||||||| || || || || || | ||||| || Sbjct 54862678 ATGCCTGGATAAACTTTCTCAAACAAGTTGATCTCTCGAGATGAAGGTCTCCATTGCGAC 54862737 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 |||||| ||||| | | | | || || || | || || ||||| ||| Sbjct 54862738 TTTGCTTGCTTGCTGTACTCTCTC-CTCCAGTCAAAGCTAAGT--GAAGAGCGCGTGAAG 54862794 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 | || || | || ||||| | | || ||| ||| | |||||| | ||| | Sbjct 54862795 GGAATAGTGAGGGATGCGGTGGATGTAGAGAGGGAGTTTGTATGCGACGCTCTTCCCTGC 54862854 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | | | || ||||| ||| | ||| || || ||||| || ||||| || || Sbjct 54862855 GCGTTAGTTGGGATGAACGGTGAGTTGATGAGTCAATACATTGAGTTCGTTGCGGATCG- 54862913 Query 61813 CTGTTGGTCGATTTGGGTATGAAGC-GGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 | | || || ||||||| || || || ||| || ||||| ||||||| || Sbjct 54862914 GTATAGGAGCTTTAGGGTATG--GCAAAATGTACAATGCGGCTAACCCTTTTGATTGGAT 54862971 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | ||||| || | || || || ||||| |||||||| | || || || ||||| Sbjct 54862972 GGAACTAATTTCATTGCAAGGGAAAACCAATTTCTTCGAGAAGAGAGTTGGGGAGTATCA 54863031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562989897760