Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-24 seq1 116 7e-24 >seq3 Length=168485022 Score = 118 bits (130), Expect = 2e-24 Identities = 208/296 (70%), Gaps = 14/296 (5%) Strand=Plus/Minus Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60 |||||| ||||| ||| | ||| | | || || ||||||| ||||| | | ||||| Sbjct 160093401 CGAGTCGGTGTCCGAGGTCGTGTTTGGCCGTAGGGCAAAATGGTAATTTCACTTCTTGGG 160093342 Query 61 GAGAGTCCGA-CCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACC 119 | || ||| |||| | ||| |||| || |||| || || |||||||| ||| || Sbjct 160093341 ATGGGTACGAACCCGCA-GTTCAAGTAGGGACATGTGGGGTTGATCTTGGGGATCGGGTT 160093283 Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATG-GGTTCTTCTTA--GTAAATAAC 176 | || |||||||| | ||| ||||| | |||| | |||| || | | | ||| | | Sbjct 160093282 GTTGTAACCGGGTCAGGTTACCAAGGTGGTGCACAAGTGGTTTTTGTCATGGAAAAAACC 160093223 Query 177 AACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCT 236 || || ||||||||| ||||||| ||||| | || |||| |||| |||||| Sbjct 160093222 GACCAA------GGGCAAAATGGTAAATTTACAAAAGTCGACTTTCCCTATGAGTTTTCT 160093169 Query 237 GGATTTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTTGGATTATATTATTG 292 || ||||||||||| || ||| || ||||| | ||| ||| ||| |||| ||| Sbjct 160093168 GGGTTTGTGCAATCGGGTTGCCTCGTTGAGATTT--AATGTTGTATT-TATTTTTG 160093116 >seq1 Length=153905722 Score = 116 bits (128), Expect = 7e-24 Identities = 198/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 2 GAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGG 61 ||||| ||||| ||| | ||||| | ||| || ||||||| ||||| | | ||||| Sbjct 133702000 GAGTCGGTGTCCGAGGTCTTGTGTCGCGGTTGGGCAAAATGGTAATTTTATTTCATGGGG 133701941 Query 62 AGAGTCCGA-CCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCT 120 | || ||| |||||| || |||| || | || || || || ||||| || | | Sbjct 133701940 TGCGTACGAACCCGAA-GTACAAGTTGGGACGTGTGGGGTTGACCTTGGGGACTGCGTTT 133701882 Query 121 TGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAAC-A 177 |||||||||| |||||||| ||| | || || | | | | | || ||| ||| | Sbjct 133701881 TGGTTACCGGTTCGGTTTACCAAAGTGCACCGTTAGCGGTTTATGTGGTGGAAAAAACTA 133701822 Query 178 ACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTG 237 || || ||||||||| |||||| |||||||| || | || |||| ||||||| Sbjct 133701821 ACCAA------GGGCAAAATGGTAAATCTACAAAGATCGACATCCCCAATGAGTTTTCTG 133701768 Query 238 GATTTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTT 278 ||||||||||||| || |||| || ||||| | || |||| Sbjct 133701767 GATTTGTGCAATCGGGTTGCTTAGTCGAGAT-TTAAGTTTT 133701728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918385966848