Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= AAMG01001756.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 2e-24
seq1 116 7e-24
>seq3
Length=168485022
Score = 118 bits (130), Expect = 2e-24
Identities = 208/296 (70%), Gaps = 14/296 (5%)
Strand=Plus/Minus
Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60
|||||| ||||| ||| | ||| | | || || ||||||| ||||| | | |||||
Sbjct 160093401 CGAGTCGGTGTCCGAGGTCGTGTTTGGCCGTAGGGCAAAATGGTAATTTCACTTCTTGGG 160093342
Query 61 GAGAGTCCGA-CCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACC 119
| || ||| |||| | ||| |||| || |||| || || |||||||| ||| ||
Sbjct 160093341 ATGGGTACGAACCCGCA-GTTCAAGTAGGGACATGTGGGGTTGATCTTGGGGATCGGGTT 160093283
Query 120 TTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATG-GGTTCTTCTTA--GTAAATAAC 176
| || |||||||| | ||| ||||| | |||| | |||| || | | | ||| | |
Sbjct 160093282 GTTGTAACCGGGTCAGGTTACCAAGGTGGTGCACAAGTGGTTTTTGTCATGGAAAAAACC 160093223
Query 177 AACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCT 236
|| || ||||||||| ||||||| ||||| | || |||| |||| ||||||
Sbjct 160093222 GACCAA------GGGCAAAATGGTAAATTTACAAAAGTCGACTTTCCCTATGAGTTTTCT 160093169
Query 237 GGATTTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTTGGATTATATTATTG 292
|| ||||||||||| || ||| || ||||| | ||| ||| ||| |||| |||
Sbjct 160093168 GGGTTTGTGCAATCGGGTTGCCTCGTTGAGATTT--AATGTTGTATT-TATTTTTG 160093116
>seq1
Length=153905722
Score = 116 bits (128), Expect = 7e-24
Identities = 198/281 (70%), Gaps = 12/281 (4%)
Strand=Plus/Minus
Query 2 GAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGG 61
||||| ||||| ||| | ||||| | ||| || ||||||| ||||| | | |||||
Sbjct 133702000 GAGTCGGTGTCCGAGGTCTTGTGTCGCGGTTGGGCAAAATGGTAATTTTATTTCATGGGG 133701941
Query 62 AGAGTCCGA-CCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCT 120
| || ||| |||||| || |||| || | || || || || ||||| || | |
Sbjct 133701940 TGCGTACGAACCCGAA-GTACAAGTTGGGACGTGTGGGGTTGACCTTGGGGACTGCGTTT 133701882
Query 121 TGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAAC-A 177
|||||||||| |||||||| ||| | || || | | | | | || ||| ||| |
Sbjct 133701881 TGGTTACCGGTTCGGTTTACCAAAGTGCACCGTTAGCGGTTTATGTGGTGGAAAAAACTA 133701822
Query 178 ACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTG 237
|| || ||||||||| |||||| |||||||| || | || |||| |||||||
Sbjct 133701821 ACCAA------GGGCAAAATGGTAAATCTACAAAGATCGACATCCCCAATGAGTTTTCTG 133701768
Query 238 GATTTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTT 278
||||||||||||| || |||| || ||||| | || ||||
Sbjct 133701767 GATTTGTGCAATCGGGTTGCTTAGTCGAGAT-TTAAGTTTT 133701728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918385966848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |